PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g951160.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family LBD
Protein Properties Length: 179aa    MW: 20237.1 Da    PI: 5.9184
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g951160.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26092.55e-2981101101
            DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkal.peeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 
                       +C aCk+l+++C+++C++apyf +e+   +f  +h +FGas++++++ ++ p +er  a   +++eA+ara dP yG+v+ il lq+q+ + +
  Pd.00g951160.m01   8 PCGACKFLKKRCKRGCIFAPYFMHEEaIMDFSSIHNVFGASKMSRIILSMlPMSERAVASWMMTFEAHARAVDPTYGCVSYILYLQEQVLNIQ 100
                       7*********************9998469****************98877377779999999******************************* PP

            DUF260  92 aelallkeel 101
                       a+l++++e+l
  Pd.00g951160.m01 101 AQLDEAHEQL 110
                       *****99985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 179 aa     Download sequence    
MSSQTFNPCG ACKFLKKRCK RGCIFAPYFM HEEAIMDFSS IHNVFGASKM SRIILSMLPM  60
SERAVASWMM TFEAHARAVD PTYGCVSYIL YLQEQVLNIQ AQLDEAHEQL ARAVAPIANP  120
NQDLENSIEQ SEVANPTEQA AVAKPTEFES LPQFSFTHTN NVDNENMNLN YHVRVIKLQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58190.18e-40LBD family protein