PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g953030.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

C3H

Protein Properties

Length: 426aa MW: 46898.9 Da PI: 7.127

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g953030.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	40	6.6e-13	87	109	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 e C+++++tG Ck+G++CkF+H+ Pd.00g953030.m01 87 EDCSYYLKTGSCKFGSNCKFNHP 109 89********************9 PP
2	zf-CCCH	30.2	7.9e-10	131	155	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 + +C++++r+G CkyG +C+++H++ Pd.00g953030.m01 131 QTECKYYLRSGGCKYGKSCRYSHSK 155 679********************95 PP
3	zf-CCCH	34.9	2.6e-11	176	200	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++++C++++r+G Cky ++C+F+H+ Pd.00g953030.m01 176 GERECPYYMRNGSCKYASNCRFNHP 200 5799********************9 PP
4	zf-CCCH	22.1	2.6e-07	316	337	6	27
-SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHgp 27 C++f+rtG Ck+ ++Ck++H++ Pd.00g953030.m01 316 CSYFLRTGDCKFKSNCKYHHPK 337 ********************96 PP
5	zf-CCCH	33	1e-10	359	382	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 + +C +++r+G+Ck+G+ CkF H+ Pd.00g953030.m01 359 QNICTHYSRYGICKFGPVCKFDHP 382 679********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 426 aa Download sequence
MEVSEAISVP PNLDANNHHI DEHHQPSHSE IGFLPSSPDP DPAPSDFDQA SEQSDGGENQ 60 SEDGGDAEKK AEESRRRYQY PVRPEAEDCS YYLKTGSCKF GSNCKFNHPV KRKGSKDKVK 120 EREEFGDKTG QTECKYYLRS GGCKYGKSCR YSHSKGKPSV APVVELNFLG LPIRLGEREC 180 PYYMRNGSCK YASNCRFNHP DPTAAGGSDP ASAFGNGGPA SLQGVPQSTV APWSAPRSLN 240 ETPLYVPMMI PPSQGVPSQN TEWNGYQAPA YLPERSMPAR QPYLMNNSMT ETNIYKQYPQ 300 HQQAEEFPER PGQPFCSYFL RTGDCKFKSN CKYHHPKTQT AVSPQCALSD KGLPLRPDQN 360 ICTHYSRYGI CKFGPVCKFD HPLNITSSTT SGPDHQLPFS DSATTNGAGT AGSRSGTDAI 420 SQLQPV

Sequence ? help Back to Top

Protein Sequence Length: 426 aa Download sequence

MEVSEAISVP PNLDANNHHI DEHHQPSHSE IGFLPSSPDP DPAPSDFDQA SEQSDGGENQ  60
SEDGGDAEKK AEESRRRYQY PVRPEAEDCS YYLKTGSCKF GSNCKFNHPV KRKGSKDKVK  120
EREEFGDKTG QTECKYYLRS GGCKYGKSCR YSHSKGKPSV APVVELNFLG LPIRLGEREC  180
PYYMRNGSCK YASNCRFNHP DPTAAGGSDP ASAFGNGGPA SLQGVPQSTV APWSAPRSLN  240
ETPLYVPMMI PPSQGVPSQN TEWNGYQAPA YLPERSMPAR QPYLMNNSMT ETNIYKQYPQ  300
HQQAEEFPER PGQPFCSYFL RTGDCKFKSN CKYHHPKTQT AVSPQCALSD KGLPLRPDQN  360
ICTHYSRYGI CKFGPVCKFD HPLNITSSTT SGPDHQLPFS DSATTNGAGT AGSRSGTDAI  420
SQLQPV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48440.1	1e-131	C3H family protein