PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g954370.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

C2H2

Protein Properties

Length: 467aa MW: 50929.6 Da PI: 9.9137

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g954370.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.6	9.5e-05	274	297	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 y+C++C ++F ++ + +H r+ H Pd.00g954370.m01 274 YTCSKCRRVFETSQFFASHARSvH 297 9********************988 PP

Sequence ? help Back to Top
Protein Sequence Length: 467 aa Download sequence
MPRSRVHIHT FIDINEPAAA QGLGGSPHLL LAQPSRNSPH LLLAQPSSSS SLRAREEVLR 60 SQLLSATSNA ERFLGQSIFP NPTSSSSSSS SVLLNTNPVN RHHPIHFGTN NTAGSTSRVN 120 KRAEASSSHA PFNFQRPKYF NNYGHIFPYR SQNSQPPTVI SIESDDDVSS SDDEPIVAEP 180 ISVYIPTPQP KPSEYQSKEP TPEAPTNFQN LNSPNSDDAR RDQSNGQREL PPSGGDGDVG 240 DLLVVPDEHV DQVAVCDLGD GKTRSLKHDK NGPYTCSKCR RVFETSQFFA SHARSVHPRS 300 PEEIARGEAL KADRKSKKRV PRKERKQEPK RKKVNKKSAS MKEKDPEPKQ KRSRVSKKSV 360 TMKEKDQEQV VAASGFAGYG SGGADSTVTI VLPHGESYSH ETIRAKKRKA RSMNVPAAVA 420 PDSGGAGDGQ VGVKIGKKKD SEKAGPSGYG GMDFEGLYEV EVQMEHK

Sequence ? help Back to Top

Protein Sequence Length: 467 aa Download sequence

MPRSRVHIHT FIDINEPAAA QGLGGSPHLL LAQPSRNSPH LLLAQPSSSS SLRAREEVLR  60
SQLLSATSNA ERFLGQSIFP NPTSSSSSSS SVLLNTNPVN RHHPIHFGTN NTAGSTSRVN  120
KRAEASSSHA PFNFQRPKYF NNYGHIFPYR SQNSQPPTVI SIESDDDVSS SDDEPIVAEP  180
ISVYIPTPQP KPSEYQSKEP TPEAPTNFQN LNSPNSDDAR RDQSNGQREL PPSGGDGDVG  240
DLLVVPDEHV DQVAVCDLGD GKTRSLKHDK NGPYTCSKCR RVFETSQFFA SHARSVHPRS  300
PEEIARGEAL KADRKSKKRV PRKERKQEPK RKKVNKKSAS MKEKDPEPKQ KRSRVSKKSV  360
TMKEKDQEQV VAASGFAGYG SGGADSTVTI VLPHGESYSH ETIRAKKRKA RSMNVPAAVA  420
PDSGGAGDGQ VGVKIGKKKD SEKAGPSGYG GMDFEGLYEV EVQMEHK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	317	333	KKRVPRKERKQEPKRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G22990.1	5e-09	C2H2 family protein