PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g957650.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family M-type_MADS
Protein Properties Length: 229aa    MW: 25573.8 Da    PI: 4.4414
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g957650.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF23.56.9e-0827671050
                      HHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
            SRF-TF 10 qvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                      ++  +kR  +   KA+ELS LCd+ v +  ++ +gk+  ++
  Pd.00g957650.m01 27 KTAMAKRGSTRNEKASELSKLCDIAVYMTAAGADGKIDSWP 67
                      5778889899999************************9998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    
MALPKSNPKI SVSTKTKRVS DAMKPHKTAM AKRGSTRNEK ASELSKLCDI AVYMTAAGAD  60
GKIDSWPENQ QDLKSVVLKY KNLRRGLKDQ VEKGSFSAEI VEDREIGDLG FQDNCLGSKV  120
PYNGFEFDHY SVETNDYLSL VLGDAHNDLQ PQSSNYMEGL KIDGHDVVAA MPSMDAADDD  180
IKLLLSDYDF DMMQDDVQFC VDDLIDMLLQ DPQQQPHSEF KCPILDLNV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41200.11e-08M-type_MADS family protein