PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g966770.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family MIKC_MADS
Protein Properties Length: 257aa    MW: 29353.1 Da    PI: 8.2399
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g966770.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF93.59.9e-30959151
                      S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
            SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                      krienk+ rqvtfskRr+g+lKKA+E+SvLCda+va+i+fs++gkl+eyss
  Pd.00g966770.m01  9 KRIENKISRQVTFSKRRAGLLKKAHEISVLCDADVALIVFSTKGKLFEYSS 59
                      79***********************************************96 PP
2K-box94.51.7e-31781744100
             K-box   4 ssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrk 96 
                       ++ +  +e + + ++ e+ kL ++ie Lqr++Rh+ GedL+sLsl+eLq+Le qLe++lk+iR++Kn+l++e+i+el kk+k+lqe+n++L k
  Pd.00g966770.m01  78 QQLTTDSEPQGSCWSLEYPKLAARIEVLQRKLRHFTGEDLDSLSLRELQNLELQLETALKRIRTRKNQLMHESISELHKKQKALQEQNNSLGK 170
                       5556678888999******************************************************************************** PP

             K-box  97 klee 100
                       kl+e
  Pd.00g966770.m01 171 KLKE 174
                       *986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    
MGRGKVQLKR IENKISRQVT FSKRRAGLLK KAHEISVLCD ADVALIVFST KGKLFEYSSD  60
SSMESILGRY DQYSHAEQQL TTDSEPQGSC WSLEYPKLAA RIEVLQRKLR HFTGEDLDSL  120
SLRELQNLEL QLETALKRIR TRKNQLMHES ISELHKKQKA LQEQNNSLGK KLKENENMLE  180
VEHDGQVQQV EQHQSNQAAY NSSTLMLMPP PPPQTSGGIQ ARGGMEDGDD NDGRTQTRPP  240
TATNTLMPMW MYRHFND
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69120.13e-77MIKC_MADS family protein