PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g971610.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

C2H2

Protein Properties

Length: 450aa MW: 48330.6 Da PI: 4.7116

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g971610.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.1	0.0012	127	149	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+++Fs+ L H +H Pd.00g971610.m01 127 YQCKTCDRCFSSFQALGGHRASH 149 9***********99999998887 PP

Sequence ? help Back to Top
Protein Sequence Length: 450 aa Download sequence
MMMMDGADHQ DHEEAVMGYK DQSQMMIIKG KRTKRQRLAS PLAHASTATA SSSSSAGHDH 60 QHQVLVGPTE TSPATSADQF TEISTEEEED MANCLILLAQ GNSTPKTQHP ILVHNNKASA 120 SAGLYVYQCK TCDRCFSSFQ ALGGHRASHK KPNKANMNIT QDNKKALSFV EEAEEYDRFN 180 NTSTTLSLQI SNRDYRASSS AATPVINSKA NKVHECSVCG AEFTSGQALG VSTIRTHEAA 240 NQNIQKRMAV PGRRNGMEED DNEDENALFE EEGLEDLDTP PHLRAIADAS QQGDLDALRL 300 ALDNLEGGSV DEPVEDGDTA LHLACLYGNL SCVQLLLERG ANLEATDEDG AIPLHDACAG 360 GYTEIVQLLI NGANDAARVK RMLEAVDAEG DTPLHHAARG EHADIIRLLL ASGASPTKAN 420 LYGKIPSDLP ELATEARTIL EAAAGAMACQ

Sequence ? help Back to Top

Protein Sequence Length: 450 aa Download sequence

MMMMDGADHQ DHEEAVMGYK DQSQMMIIKG KRTKRQRLAS PLAHASTATA SSSSSAGHDH  60
QHQVLVGPTE TSPATSADQF TEISTEEEED MANCLILLAQ GNSTPKTQHP ILVHNNKASA  120
SAGLYVYQCK TCDRCFSSFQ ALGGHRASHK KPNKANMNIT QDNKKALSFV EEAEEYDRFN  180
NTSTTLSLQI SNRDYRASSS AATPVINSKA NKVHECSVCG AEFTSGQALG VSTIRTHEAA  240
NQNIQKRMAV PGRRNGMEED DNEDENALFE EEGLEDLDTP PHLRAIADAS QQGDLDALRL  300
ALDNLEGGSV DEPVEDGDTA LHLACLYGNL SCVQLLLERG ANLEATDEDG AIPLHDACAG  360
GYTEIVQLLI NGANDAARVK RMLEAVDAEG DTPLHHAARG EHADIIRLLL ASGASPTKAN  420
LYGKIPSDLP ELATEARTIL EAAAGAMACQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28200.1	5e-39	C2H2 family protein