PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g979060.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

LBD

Protein Properties

Length: 333aa MW: 37537.1 Da PI: 8.6291

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g979060.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	127.7	5.5e-40	205	299	6	100
DUF260 6 kvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 k+lrr+CakdC++apyfp+++p+kfa vhk+FGasnv+k+l++lp ++r da+sslvyeA+ar+rdPvyG+vg i+ lq+q++ql+ +la+++ Pd.00g979060.m01 205 KLLRRRCAKDCIFAPYFPSDDPHKFALVHKVFGASNVSKMLQELPIHQRGDAVSSLVYEANARVRDPVYGCVGAISFLQSQVSQLQMQLAVAQ 297 89****************************************************************************************999 PP DUF260 99 ee 100 +e Pd.00g979060.m01 298 AE 299 87 PP

Sequence ? help Back to Top
Protein Sequence Length: 333 aa Download sequence
MSEIFHSLVL NKRFDDATLR VLESALVSKD VKSSIEVRSG LRQFLRSESL SVLREISEKS 60 AEEKLLVLEF LVRSFALSCL ALRYEALLLR DLKSVTNPWL QVPYTEWLNF AHQSKDSGFH 120 SVAGRACENA LVCFKRKCAE HPKTDEVYVT KKSTEDAKAD GIFENVQVIE QIKRLKDCAM 180 ASASSHSGTQ MAFSSRLNFR AKGQKLLRRR CAKDCIFAPY FPSDDPHKFA LVHKVFGASN 240 VSKMLQELPI HQRGDAVSSL VYEANARVRD PVYGCVGAIS FLQSQVSQLQ MQLAVAQAEI 300 LCIQMQQEPQ YFSSFASSSN VIQDPLKRES LWT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30130.1	2e-56	LBD family protein