PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g979630.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family LBD
Protein Properties Length: 174aa    MW: 19603.4 Da    PI: 6.747
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g979630.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260129.81.2e-4060155196
            DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 
                       +CaaCk+lrr+Ca++C+++pyf  ++p+kf +vhk+FGasnv+k+l ++ e++r da++slvyeA+ r+rdPvyG++gvi++lqqq+++l++e
  Pd.00g979630.m01  60 PCAACKLLRRRCAEECPFSPYFSPHEPQKFLAVHKIFGASNVSKMLIEVAENQRADAANSLVYEANLRLRDPVYGCMGVISTLQQQIQSLQQE 152
                       7******************************************************************************************** PP

            DUF260  94 lal 96 
                       l++
  Pd.00g979630.m01 153 LNA 155
                       986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 174 aa     Download sequence    
MSRDRDIITL DEIGKKIRRE SDPSGDDQMG TMSTARHNSS FGLPQGMMMM NNTALNTITP  60
CAACKLLRRR CAEECPFSPY FSPHEPQKFL AVHKIFGASN VSKMLIEVAE NQRADAANSL  120
VYEANLRLRD PVYGCMGVIS TLQQQIQSLQ QELNAELSCL TEYKSNLTYL YIWA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40470.16e-60LBD family protein