PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g984780.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

C3H

Protein Properties

Length: 1037aa MW: 122163 Da PI: 7.0963

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g984780.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	18.9	2.6e-06	233	252	6	25
-SGGGGTS--TTTTT-SS-S CS zf-CCCH 6 CrffartGtCkyGdrCkFaH 25 C+f+++tG C++G rC++ H Pd.00g984780.m01 233 CPFHLKTGACRFGQRCSRVH 252 ******************99 PP
2	zf-CCCH	24.2	5.7e-08	362	389	1	26
--S---SGGGGTS..--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartG..tCkyGdrCkFaHg 26 +k ++C ++++ tC++G C+F+H+ Pd.00g984780.m01 362 WKVAICGEYMKSRykTCSHGTACNFIHC 389 899************************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 1037 aa Download sequence
MDLADPVAKE GGEADAEPKM ERLAEEKGTN RKEKRKAMKK MKRKQTRKEM ALKEREEEEA 60 ILNDPQELMK IKLMEQEEAE RSERERKLFE ERERAWIEAM EIKRKKQIEE EEEEEERRMK 120 ALEEEELSRK QQVENENDGN EVDDWDYIEE GPAEIIWQGN EIIVKKKRIK VPKRNTEQQS 180 RKEDCDRPTS NPLPPQSEAF SDYKNSSMSA QQLIENVAQQ VPHFGTEQDK AHCPFHLKTG 240 ACRFGQRCSR VHFYPDKSST LLIKNMYNGP GLAWEQDEVL EHTDEEVERC YEEFYEDVHT 300 EFLKFGEIIN FKVCRNGAFH LRGNVYIHYK SLGSAVLAHQ SINGRYFAGK QISCEFINVT 360 RWKVAICGEY MKSRYKTCSH GTACNFIHCF HNPGGDYEWA DSDRPAPKYW VRKMVALFGY 420 SDADEKQMVE ENFGQLRNSS KMTMADSERY GLRRSRSRGR DYSSFVGSGR RYDSEDYVLK 480 DAERQRHTGD DRHRGKTLDE DRCEENKNLK DYHCRKSRRS DTEFDRQLLD REEDRDRHHG 540 HTRKSSRQQN RDHKNKTYEN ESDGDLSDRA RNRVAQHGCT RESSSQQRKG EFLDEYGDWQ 600 NKNHEVDRDW SDRDKDRDAY HDNRKSSGHK RKVGCPDNHN DSKNRAHDMD EEWSDSNSKG 660 GKHHSRRKRF RHISKASEFL NHRGRTTRSC SYELSDDLLE NDAERNISHA RKRSKCLDEV 720 SDISDEDRFP TQNLEHRHDR LSLEMREAGA LVKKLKSDGT HESSSLGQDG ERYRSHDFDI 780 RYISDVHMDK QDRWEPEDGS VEIFHNSKTK AGSSESYESG RPGPYNVRGE SSDFDSEDKV 840 GQEDQYESDK VAHSKHRKSR RKSTHDDRKR DSENRSLCSS QSSHRRHSNR LEATDSSEDN 900 NESGRKHNQK HHADHRSRDH KRDHKSRRYV TSDDVVEFNG VFKDIKVEEM LGGLLRFSLS 960 ARDRNNERNG CQSQQHNRRP RQQRISPLLW PLLFVFVFVQ LVLRTQDLEP CIADKMMRLD 1020 LRCKESLLDV LGIQPWR

Sequence ? help Back to Top

Protein Sequence Length: 1037 aa Download sequence

MDLADPVAKE GGEADAEPKM ERLAEEKGTN RKEKRKAMKK MKRKQTRKEM ALKEREEEEA  60
ILNDPQELMK IKLMEQEEAE RSERERKLFE ERERAWIEAM EIKRKKQIEE EEEEEERRMK  120
ALEEEELSRK QQVENENDGN EVDDWDYIEE GPAEIIWQGN EIIVKKKRIK VPKRNTEQQS  180
RKEDCDRPTS NPLPPQSEAF SDYKNSSMSA QQLIENVAQQ VPHFGTEQDK AHCPFHLKTG  240
ACRFGQRCSR VHFYPDKSST LLIKNMYNGP GLAWEQDEVL EHTDEEVERC YEEFYEDVHT  300
EFLKFGEIIN FKVCRNGAFH LRGNVYIHYK SLGSAVLAHQ SINGRYFAGK QISCEFINVT  360
RWKVAICGEY MKSRYKTCSH GTACNFIHCF HNPGGDYEWA DSDRPAPKYW VRKMVALFGY  420
SDADEKQMVE ENFGQLRNSS KMTMADSERY GLRRSRSRGR DYSSFVGSGR RYDSEDYVLK  480
DAERQRHTGD DRHRGKTLDE DRCEENKNLK DYHCRKSRRS DTEFDRQLLD REEDRDRHHG  540
HTRKSSRQQN RDHKNKTYEN ESDGDLSDRA RNRVAQHGCT RESSSQQRKG EFLDEYGDWQ  600
NKNHEVDRDW SDRDKDRDAY HDNRKSSGHK RKVGCPDNHN DSKNRAHDMD EEWSDSNSKG  660
GKHHSRRKRF RHISKASEFL NHRGRTTRSC SYELSDDLLE NDAERNISHA RKRSKCLDEV  720
SDISDEDRFP TQNLEHRHDR LSLEMREAGA LVKKLKSDGT HESSSLGQDG ERYRSHDFDI  780
RYISDVHMDK QDRWEPEDGS VEIFHNSKTK AGSSESYESG RPGPYNVRGE SSDFDSEDKV  840
GQEDQYESDK VAHSKHRKSR RKSTHDDRKR DSENRSLCSS QSSHRRHSNR LEATDSSEDN  900
NESGRKHNQK HHADHRSRDH KRDHKSRRYV TSDDVVEFNG VFKDIKVEEM LGGLLRFSLS  960
ARDRNNERNG CQSQQHNRRP RQQRISPLLW PLLFVFVFVQ LVLRTQDLEP CIADKMMRLD  1020
LRCKESLLDV LGIQPWR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10320.1	1e-144	C3H family protein