PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g987540.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family M-type_MADS
Protein Properties Length: 251aa    MW: 29176.9 Da    PI: 9.5986
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g987540.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF382.2e-1285133350
                       --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-.TTSEEEEEE CS
            SRF-TF   3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifs.stgklyeys 50 
                       i+ + nr vtf kR++ ++ K  E+ +LC++ ++ +++  s+ k+  ++
  Pd.00g987540.m01  85 ISHEPNRRVTFKKRKASLFRKLTEITTLCGIIACAVVYDpSDSKMDAWP 133
                       88899*************************9998777751567888887 PP
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    
MLGRDAIGGL LGRPWNCLIF VRWSTSVDLW KLSKAPAWNL LVQSCSCEHW IISLYILLER  60
KFRKHPRYFF VFSTMGKNKI KHELISHEPN RRVTFKKRKA SLFRKLTEIT TLCGIIACAV  120
VYDPSDSKMD AWPSPQEAFY VLENFKKLPE QRRGQFMMDQ KAFLKKNISR LNGQLERARF  180
KNQALDAELL LIEYLEGKNL RDSSRLGSLL ALEDQLAKKI SFITNRIEFM EVLEPNEVDA  240
EINSDEMGDQ G
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16099RKFRKHPRYFFVFSTMGKNKIKHELISHEPNRRVTFKKRK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22590.27e-27M-type_MADS family protein