PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g987940.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family MIKC_MADS
Protein Properties Length: 225aa    MW: 25751.5 Da    PI: 9.8567
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g987940.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF99.11.8e-312777151
                      S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
            SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                      krien++nrqvtf+kRrng+lKKA+ELS+LCdaeva+i+fss+g+lyeys+
  Pd.00g987940.m01 27 KRIENTTNRQVTFCKRRNGLLKKAYELSILCDAEVALIVFSSRGRLYEYSN 77
                      79***********************************************95 PP
2K-box83.16.4e-2896184593
             K-box   5 sgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenka 93 
                        ++s +e +a+++qqe+akL+++i++Lq+++Rhl+G+ L++Ls+keL+qLe++L++++++iRskK+  l ++   l+ k  e++++++a
  Pd.00g987940.m01  96 GSTSITEINAQYYQQESAKLRQQIQMLQNSNRHLMGDALSTLSVKELKQLENRLDRGINRIRSKKEIELENENVCLRTKISEVERIQQA 184
                       34558999************************************************************************999988775 PP
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    
MSEGSIEFIL LNVGLQIKMG RGKIEIKRIE NTTNRQVTFC KRRNGLLKKA YELSILCDAE  60
VALIVFSSRG RLYEYSNNNI RNTIERYKKA CSDSSGSTSI TEINAQYYQQ ESAKLRQQIQ  120
MLQNSNRHLM GDALSTLSVK ELKQLENRLD RGINRIRSKK EIELENENVC LRTKISEVER  180
IQQANMVGPE LNAIQALASR NFFSQNMMEG GATYPQQDKK ILHLG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09960.21e-113MIKC_MADS family protein