PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g989520.m02

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

MIKC_MADS

Protein Properties

Length: 890aa MW: 99673.4 Da PI: 8.7139

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g989520.m02	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	70.2	1.9e-22	67	110	8	51
HHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 8 nrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 rqvtfskRr g++KKA ELSvLC+ evav+ifs t+kl++yss Pd.00g989520.m02 67 ARQVTFSKRRRGLFKKAAELSVLCESEVAVVIFSATDKLFDYSS 110 69****************************************96 PP
2	K-box	50.1	1.2e-17	111	188	22	99
K-box 22 akLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 ++L e+e+ r++R+++GedL+ L+l eL +Leq +e sl ++ ++K+el++++i l kk el e+n++Lr+k++ Pd.00g989520.m02 111 SRLDYEVEEKSRQLRQMKGEDLKGLNLDELLKLEQLVEASLGRVIETKEELIMSEIMALEKKGAELAEANNQLRQKMQ 188 677888888889***************************************************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 890 aa Download sequence
MLRFALSRYK INGGDCMHQR QGASVPVDLL SFSGQTKTSD RAETPTREMV KMMREKIKIK 60 KIDYLPARQV TFSKRRRGLF KKAAELSVLC ESEVAVVIFS ATDKLFDYSS SRLDYEVEEK 120 SRQLRQMKGE DLKGLNLDEL LKLEQLVEAS LGRVIETKEE LIMSEIMALE KKGAELAEAN 180 NQLRQKMQML SGGNTGPAFV EPETLITNVG GGGEEDGMSS ESALIATSTS CNSAVSLSLE 240 DDCSDVTLSL KLGLPYVTAH ANLIRSCLLD WGLVPIQSQR VPLISSSLQT SIEGGTKSLV 300 NKLKVIRDYV SQWPILVRVL YRVLVDKFLA PFRTISNVRC SDQRSWKNDH GEEFLFVSSL 360 GFSNQNSNEP MKLHKDYYGY YYPNQSQRAA LAGLLVVLFP AFFPNLFGPL GRASPSIFSE 420 WNAPKARHLH LLNPALLLQS SVEQQSKLWS PLPNQGWKRC LEESKSLSLT PKGSTGYIQV 480 FLDGGLNQQK MGICDAVAVA KILNATLVVP HLEVNPVWQD SSSFEEIFDL DHFIEVLSDE 540 VSIVKGLPSE FSWSTREYYA TGIRITRIKT APVHASSDWY LENVLPILQR YGVAAISPFS 600 HRLTFENLPK NIQHLRCKVN FQALAFVPHI RELGETLVNR LRYPPNRNQG AASDSQDGTN 660 QIEKQGAGKF VVLHLRFDKD MAAHSACDFG GGKAEKLALA KYRQVIWQGR VLKSQFTDEE 720 LRNQGRCPLT PEEIGLLLAA LGFNNSTRLY LASHMVYGGE ARISTLRRLF PLMEDKKSLA 780 STEERAKVEG KASLLAAVDY YVSMQSDIFI SASPGNMHNA LVGHRAYMDL KTIRPSMSLL 840 GKLFVNKSME WSEFQHAVLD GHKSRQGQIR LRKEKQSIYT YPAPDCMCQA

Sequence ? help Back to Top

Protein Sequence Length: 890 aa Download sequence

MLRFALSRYK INGGDCMHQR QGASVPVDLL SFSGQTKTSD RAETPTREMV KMMREKIKIK  60
KIDYLPARQV TFSKRRRGLF KKAAELSVLC ESEVAVVIFS ATDKLFDYSS SRLDYEVEEK  120
SRQLRQMKGE DLKGLNLDEL LKLEQLVEAS LGRVIETKEE LIMSEIMALE KKGAELAEAN  180
NQLRQKMQML SGGNTGPAFV EPETLITNVG GGGEEDGMSS ESALIATSTS CNSAVSLSLE  240
DDCSDVTLSL KLGLPYVTAH ANLIRSCLLD WGLVPIQSQR VPLISSSLQT SIEGGTKSLV  300
NKLKVIRDYV SQWPILVRVL YRVLVDKFLA PFRTISNVRC SDQRSWKNDH GEEFLFVSSL  360
GFSNQNSNEP MKLHKDYYGY YYPNQSQRAA LAGLLVVLFP AFFPNLFGPL GRASPSIFSE  420
WNAPKARHLH LLNPALLLQS SVEQQSKLWS PLPNQGWKRC LEESKSLSLT PKGSTGYIQV  480
FLDGGLNQQK MGICDAVAVA KILNATLVVP HLEVNPVWQD SSSFEEIFDL DHFIEVLSDE  540
VSIVKGLPSE FSWSTREYYA TGIRITRIKT APVHASSDWY LENVLPILQR YGVAAISPFS  600
HRLTFENLPK NIQHLRCKVN FQALAFVPHI RELGETLVNR LRYPPNRNQG AASDSQDGTN  660
QIEKQGAGKF VVLHLRFDKD MAAHSACDFG GGKAEKLALA KYRQVIWQGR VLKSQFTDEE  720
LRNQGRCPLT PEEIGLLLAA LGFNNSTRLY LASHMVYGGE ARISTLRRLF PLMEDKKSLA  780
STEERAKVEG KASLLAAVDY YVSMQSDIFI SASPGNMHNA LVGHRAYMDL KTIRPSMSLL  840
GKLFVNKSME WSEFQHAVLD GHKSRQGQIR LRKEKQSIYT YPAPDCMCQA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24540.1	5e-27	MIKC_MADS family protein