PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g997760.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family MYB
Protein Properties Length: 316aa    MW: 35597 Da    PI: 6.6537
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g997760.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding59.47.6e-192269148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      rg+WT eEd ll+++++++G g+W++ a++ g++Rt+k+c++rw++yl
  Pd.00g997760.m01 22 RGPWTLEEDTLLIQYIARHGEGRWNLLAKRSGLRRTGKSCRLRWLNYL 69
                      89********************************************97 PP
2Myb_DNA-binding53.17.1e-1775118146
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       rg+ ++eE++l++d++ ++G++ W++Ia++++ gRt++++k++w++
  Pd.00g997760.m01  75 RGNLSPEEQLLILDLHSKWGNR-WSKIAQYLP-GRTDNEIKNYWRT 118
                       7899******************.*********.***********96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    
MSSNTKSLSS TSCSEDESEL RRGPWTLEED TLLIQYIARH GEGRWNLLAK RSGLRRTGKS  60
CRLRWLNYLK PDVKRGNLSP EEQLLILDLH SKWGNRWSKI AQYLPGRTDN EIKNYWRTRV  120
QKQARHLKVD TNSTEFQNII RCFWMPRLLQ KIGGESSFSS PMLIQNQMAL QPLDNVSQHL  180
TAATASPPQI PGQGALNMSG TIYNLDSIQK QNAESEFCTS SCILPSEPVD MPKMSQFPEC  240
PPSPFHAILN NDNAKGGFCV DNNGYDIEAF NLQGSVSAQG FAGNSAGDCY VAESNWLDSD  300
FSCGMWSMDE LWQSRS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25340.19e-81MYB family protein