PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RDX58655.1

Organism

Mucuna pruriens

Taxonomic ID

157652

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Mucuna

Family

C3H

Protein Properties

Length: 418aa MW: 45928.6 Da PI: 8.0505

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RDX58655.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	32.2	1.8e-10	48	73	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++ C +++rtG C yG++C+++H+ RDX58655.1 48 PGEPDCLYYLRTGMCGYGSNCRYHHP 73 5789*********************9 PP
2	zf-CCCH	36.1	1.1e-11	92	116	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C +f++tGtCkyG +Ck++H++ RDX58655.1 92 QPDCEYFLKTGTCKYGTTCKYHHPK 116 789********************96 PP
3	zf-CCCH	38.1	2.5e-12	139	161	5	27
--SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27 C++++rtG Ck+G CkF+H++ RDX58655.1 139 SCPYYMRTGSCKFGVACKFHHPQ 161 6********************97 PP
4	zf-CCCH	40.1	6.2e-13	272	297	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++Cr+f+ tGtCkyG+ CkF+H++ RDX58655.1 272 DQPECRYFMSTGTCKYGSDCKFHHPK 297 689*********************96 PP
5	zf-CCCH	31.8	2.4e-10	314	339	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +++++C++++ +G C++G++CkF H+ RDX58655.1 314 PGQAICSYYRIYGMCRFGPTCKFDHP 339 5789*********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 418 aa Download sequence
MPENRQVLRN ADSTPSGDNI EEAIRRLKIN DNWDRDAAAQ STQFPDRPGE PDCLYYLRTG 60 MCGYGSNCRY HHPVHIPIGT HYGEELPQRA GQPDCEYFLK TGTCKYGTTC KYHHPKDRRG 120 AAPVSFNTLG LPMRQEEKSC PYYMRTGSCK FGVACKFHHP QHASLGAYPL AGSPTSTIIP 180 TSGLPYAGGY PAWSVPRMSY LSGQGLQSYV PPFLSSSQGI IPVQSWNNYM GSVNPAMPTG 240 FLGSNLVYDF MNLGESLFGG QAINSSLPNR PDQPECRYFM STGTCKYGSD CKFHHPKERI 300 AQSSINPLGL PVRPGQAICS YYRIYGMCRF GPTCKFDHPV LAVPQNYGMT SPALSVLETP 360 LISNPRGLSN VQPPETSPSK LSSDKLQHSD AKAAKEDSSK QADTTSNSFP ASSEPLHD

Sequence ? help Back to Top

Protein Sequence Length: 418 aa Download sequence

MPENRQVLRN ADSTPSGDNI EEAIRRLKIN DNWDRDAAAQ STQFPDRPGE PDCLYYLRTG  60
MCGYGSNCRY HHPVHIPIGT HYGEELPQRA GQPDCEYFLK TGTCKYGTTC KYHHPKDRRG  120
AAPVSFNTLG LPMRQEEKSC PYYMRTGSCK FGVACKFHHP QHASLGAYPL AGSPTSTIIP  180
TSGLPYAGGY PAWSVPRMSY LSGQGLQSYV PPFLSSSQGI IPVQSWNNYM GSVNPAMPTG  240
FLGSNLVYDF MNLGESLFGG QAINSSLPNR PDQPECRYFM STGTCKYGSD CKFHHPKERI  300
AQSSINPLGL PVRPGQAICS YYRIYGMCRF GPTCKFDHPV LAVPQNYGMT SPALSVLETP  360
LISNPRGLSN VQPPETSPSK LSSDKLQHSD AKAAKEDSSK QADTTSNSFP ASSEPLHD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G04990.2	1e-107	C3H family protein