PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RDX61673.1

Organism

Mucuna pruriens

Taxonomic ID

157652

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Mucuna

Family

C3H

Protein Properties

Length: 460aa MW: 50710.4 Da PI: 8.6679

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RDX61673.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	19	2.5e-06	411	433	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 ++C +f + C+ G++C++ H+ RDX61673.1 411 KPCIYFNTSKGCRNGSNCPYQHD 433 69********************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 460 aa Download sequence
VKLFLSEDCP SKVNKKSQDH LQARALSIRP STTNEYDDLP PGFEGKHFQN QPKAELSHIS 60 QIKWQCPPLF ALKYDWLVVA GEGSEEKHDQ KLREIKVLEA VYPRISAIPP RPCVSSDVEK 120 ECYDDSLTPL IPLNPIDEEE SLENIQHDAV VTKHADSPTK LQSQRIQQYI PAATSPIYSH 180 CNASTVVSSS SEMDLVAASA AVAAAILKSN DQGSNIDMDL LLKIVNDPIM IEKLTDKQRT 240 ATTTVSISSN GASVVTPPVP LSSPTLARHA ISIHSVTRPT PSPHMHRPVN KNIPHMPNGV 300 LPSLSFHPSQ QGMKRTAPLD SVSCSELNTV RVPSPSANMH PVAKQARYTT AGSVPSQPGA 360 VKDVNYYKNL IRIHGTDKQN LQDSRIGVCH NNFQDLKRPR NNGQVKPKIQ KPCIYFNTSK 420 GCRNGSNCPY QHDMSVQQES GNVQSTQNAK RLKLESRTIN

Sequence ? help Back to Top

Protein Sequence Length: 460 aa Download sequence

VKLFLSEDCP SKVNKKSQDH LQARALSIRP STTNEYDDLP PGFEGKHFQN QPKAELSHIS  60
QIKWQCPPLF ALKYDWLVVA GEGSEEKHDQ KLREIKVLEA VYPRISAIPP RPCVSSDVEK  120
ECYDDSLTPL IPLNPIDEEE SLENIQHDAV VTKHADSPTK LQSQRIQQYI PAATSPIYSH  180
CNASTVVSSS SEMDLVAASA AVAAAILKSN DQGSNIDMDL LLKIVNDPIM IEKLTDKQRT  240
ATTTVSISSN GASVVTPPVP LSSPTLARHA ISIHSVTRPT PSPHMHRPVN KNIPHMPNGV  300
LPSLSFHPSQ QGMKRTAPLD SVSCSELNTV RVPSPSANMH PVAKQARYTT AGSVPSQPGA  360
VKDVNYYKNL IRIHGTDKQN LQDSRIGVCH NNFQDLKRPR NNGQVKPKIQ KPCIYFNTSK  420
GCRNGSNCPY QHDMSVQQES GNVQSTQNAK RLKLESRTIN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G02560.2	5e-06	HB-other family protein