PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RDX62282.1

Organism

Mucuna pruriens

Taxonomic ID

157652

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Mucuna

Family

C3H

Protein Properties

Length: 858aa MW: 95602 Da PI: 8.1875

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RDX62282.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	20.2	1.1e-06	147	169	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 t +Cr+fa+ G C++G+ C+F H RDX62282.1 147 TQPCRDFAA-GKCRRGSHCHFVHH 169 679****.***********5 PP

Sequence ? help Back to Top
Protein Sequence Length: 858 aa Download sequence
MSGSGRKTSS KWDSRDEPEI ASYSTASSNS SKWSSLEGND MLKPMMGFSC KEPFSGGRGS 60 NKDDIMDRDY KVLDATDARD TDGSYSMKMS PGFEDCKNNK YNQSPKNGCN RSVRSNRSRS 120 RSRSPPHSYG WDSGVNDRYR MRAGGLTQPC RDFAAGKCRR GSHCHFVHHN IQNYDDSWES 180 RHRQDGTPRY SAPHESGDYS RTSGRSNGTC INYAKGRCRM GASCKYVHHD SADQFSKVSV 240 DESTREREID RRRTESSFEQ GGRHSINQNG DIPCKFFAFG NCRNGKHCRF SHDRQACGSL 300 NRRFRDDIDR SRSSQGGDQA LDRPKLSEVS PNGGLRDDRW GLDGSMADVD RVWDGSKQND 360 LAVVSDIAKL IKDNKNGIMG ASEPEFTAWP ISDGWDHSLD KNRVHGESPF SSDMKEANWT 420 AKNDSANIHT SQSIGADIWP GNEKMSPDWN YGAGSSAHTK EEHGQQTKQQ VAPVTQTNLL 480 IYILHINLNF CTILPGHVFH QNVNALHSSS CQAVGQSQVA ASIVPPRVRT VEGMQNQEVS 540 AETKYIVEPN IMDVNLSQVG SRNPPTQNMV SKEQLAQFTS LSASLAQIIG SGLQLPQLYA 600 SSISLDAKDT TPFLSKTEGS GNPVSITLIK PDPAVGHQKL CDPICNNRDP KNANANGVSP 660 TFSPSKKFPK DTVEIPSLLS KLRQHFDDSK SAFSEEQHAK SEHSVQLQKG ENVEVNKENN 720 KVVAEEKQSS PCENKITEEN GPLENLDQNS GPDEAKKMKD MKGVRAFKFS LVEFVKELLK 780 PTWKDGKITK EDYKAIVKKV TDKVTGTVQR AHFPQTQEKI DRYLSLSKPK LNKLIQVSDG 840 SLTHFLQMYE EFQILFPI

Sequence ? help Back to Top

Protein Sequence Length: 858 aa Download sequence

MSGSGRKTSS KWDSRDEPEI ASYSTASSNS SKWSSLEGND MLKPMMGFSC KEPFSGGRGS  60
NKDDIMDRDY KVLDATDARD TDGSYSMKMS PGFEDCKNNK YNQSPKNGCN RSVRSNRSRS  120
RSRSPPHSYG WDSGVNDRYR MRAGGLTQPC RDFAAGKCRR GSHCHFVHHN IQNYDDSWES  180
RHRQDGTPRY SAPHESGDYS RTSGRSNGTC INYAKGRCRM GASCKYVHHD SADQFSKVSV  240
DESTREREID RRRTESSFEQ GGRHSINQNG DIPCKFFAFG NCRNGKHCRF SHDRQACGSL  300
NRRFRDDIDR SRSSQGGDQA LDRPKLSEVS PNGGLRDDRW GLDGSMADVD RVWDGSKQND  360
LAVVSDIAKL IKDNKNGIMG ASEPEFTAWP ISDGWDHSLD KNRVHGESPF SSDMKEANWT  420
AKNDSANIHT SQSIGADIWP GNEKMSPDWN YGAGSSAHTK EEHGQQTKQQ VAPVTQTNLL  480
IYILHINLNF CTILPGHVFH QNVNALHSSS CQAVGQSQVA ASIVPPRVRT VEGMQNQEVS  540
AETKYIVEPN IMDVNLSQVG SRNPPTQNMV SKEQLAQFTS LSASLAQIIG SGLQLPQLYA  600
SSISLDAKDT TPFLSKTEGS GNPVSITLIK PDPAVGHQKL CDPICNNRDP KNANANGVSP  660
TFSPSKKFPK DTVEIPSLLS KLRQHFDDSK SAFSEEQHAK SEHSVQLQKG ENVEVNKENN  720
KVVAEEKQSS PCENKITEEN GPLENLDQNS GPDEAKKMKD MKGVRAFKFS LVEFVKELLK  780
PTWKDGKITK EDYKAIVKKV TDKVTGTVQR AHFPQTQEKI DRYLSLSKPK LNKLIQVSDG  840
SLTHFLQMYE EFQILFPI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33835.1	1e-09	C3H family protein