PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RDX63633.1

Organism

Mucuna pruriens

Taxonomic ID

157652

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Mucuna

Family

LSD

Protein Properties

Length: 201aa MW: 22297.1 Da PI: 9.3404

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RDX63633.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	42.7	9.1e-14	96	120	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gCr lL YPrGA++V+CalC+t+ RDX63633.1 96 CNGCRSLLLYPRGATNVCCALCNTI 120 ***********************97 PP
2	zf-LSD1	49.4	7.4e-16	135	159	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggCrtlL+Y+rGA+sVRC++C+tV RDX63633.1 135 CGGCRTLLMYTRGATSVRCSCCHTV 159 ************************9 PP
3	zf-LSD1	48.5	1.4e-15	173	196	1	24
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdt 24 Cg+Crt+L+YP+GApsV+CalC+ RDX63633.1 173 CGNCRTTLMYPYGAPSVKCALCHY 196 **********************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 201 aa Download sequence
MRRRRGNIGS RRNCKRERVG LRIESQSSTS SFHYTHIFRF LHSSLNLFFF PPLTPSFSPK 60 QKQQLLFLFL FSCFLLFDLV VAAGSGATAM QSQLVCNGCR SLLLYPRGAT NVCCALCNTI 120 TSVPPPGMEM SQLYCGGCRT LLMYTRGATS VRCSCCHTVN LVPASNQVAH VHCGNCRTTL 180 MYPYGAPSVK CALCHYITNV S

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32540.1	2e-57	LSD family protein