PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RDX66305.1

Organism

Mucuna pruriens

Taxonomic ID

157652

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Mucuna

Family

C3H

Protein Properties

Length: 488aa MW: 51028.1 Da PI: 8.3581

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RDX66305.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	36.5	8e-12	48	73	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C +++rtG+C yG rC+F+H++ RDX66305.1 48 DEADCIYYLRTGFCGYGTRCRFNHPR 73 6799********************96 PP
2	zf-CCCH	37.9	2.9e-12	95	119	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C++++rtG Ck+G++Ck++H++ RDX66305.1 95 QPVCQYYMRTGSCKFGASCKYHHPR 119 689********************96 PP
3	zf-CCCH	35.1	2.3e-11	141	165	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C+++ +tG+Ck+G++CkF+H++ RDX66305.1 141 EKECSYYVKTGQCKFGATCKFHHPQ 165 679********************97 PP
4	zf-CCCH	37.7	3.4e-12	306	331	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+++++tG+Ck+G++C+++H+p RDX66305.1 306 DQPECHYYMKTGECKFGPSCRYHHPP 331 689*********************97 PP
5	zf-CCCH	30.8	5.2e-10	353	377	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++C ++ + G Ck+G+ CkF H++ RDX66305.1 353 APPCTHYTQRGVCKFGSACKFDHPM 377 689********************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 488 aa Download sequence
MERYGRPSEG SQSDPPPEWT VAGGDTGLEE SSWQLGLAGA ESYPLRPDEA DCIYYLRTGF 60 CGYGTRCRFN HPRDRAAVVG AAARTGGEFP ERVGQPVCQY YMRTGSCKFG ASCKYHHPRQ 120 AAGTATPVPL NYYGYPLRVG EKECSYYVKT GQCKFGATCK FHHPQPAGVQ VLAPSPVTPV 180 SPLPVPVPSP MYSTVQPPSG PSSQQYGVLV ARPSMLPGSV VQGPYGPMVV SPAMVPFSGW 240 GPYQAPATNP VLPSSTTSNV GSTQLYGITQ LPSPAASYTG PYQSSGSSIG PSGASQKEHP 300 FPERPDQPEC HYYMKTGECK FGPSCRYHHP PDKSAPKANV ILSPVGLPLR PGAPPCTHYT 360 QRGVCKFGSA CKFDHPMGSL SYSPSASSLA DMPVAPYPVG SSIGTLAPSS SSSELRPELG 420 AGSSKESVSS RMSSMSTSTG SVGLTLSSVG PISHSSTQPS AQSSSSSATT SATTSSTPAI 480 VTQGGSQI

Sequence ? help Back to Top

Protein Sequence Length: 488 aa Download sequence

MERYGRPSEG SQSDPPPEWT VAGGDTGLEE SSWQLGLAGA ESYPLRPDEA DCIYYLRTGF  60
CGYGTRCRFN HPRDRAAVVG AAARTGGEFP ERVGQPVCQY YMRTGSCKFG ASCKYHHPRQ  120
AAGTATPVPL NYYGYPLRVG EKECSYYVKT GQCKFGATCK FHHPQPAGVQ VLAPSPVTPV  180
SPLPVPVPSP MYSTVQPPSG PSSQQYGVLV ARPSMLPGSV VQGPYGPMVV SPAMVPFSGW  240
GPYQAPATNP VLPSSTTSNV GSTQLYGITQ LPSPAASYTG PYQSSGSSIG PSGASQKEHP  300
FPERPDQPEC HYYMKTGECK FGPSCRYHHP PDKSAPKANV ILSPVGLPLR PGAPPCTHYT  360
QRGVCKFGSA CKFDHPMGSL SYSPSASSLA DMPVAPYPVG SSIGTLAPSS SSSELRPELG  420
AGSSKESVSS RMSSMSTSTG SVGLTLSSVG PISHSSTQPS AQSSSSSATT SATTSSTPAI  480
VTQGGSQI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18550.1	1e-141	C3H family protein