PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RDX69910.1

Organism

Mucuna pruriens

Taxonomic ID

157652

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Mucuna

Family

M-type_MADS

Protein Properties

Length: 368aa MW: 40682.9 Da PI: 4.8351

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RDX69910.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	38.1	2e-12	5	49	2	46
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkl 46 ie+ r+v + k r+ +lKK +EL +LCd++++ i++++ +k+ RDX69910.1 5 LIEDLASRKVCYRKGRTSLLKKVKELTTLCDVDACAIVYGPGDKV 49 699999**********************************98775 PP

Sequence ? help Back to Top
Protein Sequence Length: 368 aa Download sequence
MEPKLIEDLA SRKVCYRKGR TSLLKKVKEL TTLCDVDACA IVYGPGDKVP LVWPSRDKTK 60 ELLDKFENAP LSDRRRKNVN QQVYIEQKNK KIENQIVKLK EKNVEKDMSN FMHKIHDDGK 120 SLSDFDASDL CRLLYYVERK LERVRVKAAH SQQQLSPNPP TPPVSLQNDI DFWANLDEQV 180 LEQSFLDLLK EDGMMNSGFD NNIGSNMGLP PFPQHLGDVD MVLPQDNIEG FNLGDIDMVL 240 PPGNFGGLID ESGLESGVLP QGNFIDLNGH SDSGLLYGSS SSEIGGSDIW PIYGNFGGTI 300 GGSDMMLPFS NFEGNICGTF MGGSINNIGL WSHQRNFGVG SSNPNFVGTN KSANATTSGC 360 RVDVLFLQ

Sequence ? help Back to Top

Protein Sequence Length: 368 aa Download sequence

MEPKLIEDLA SRKVCYRKGR TSLLKKVKEL TTLCDVDACA IVYGPGDKVP LVWPSRDKTK  60
ELLDKFENAP LSDRRRKNVN QQVYIEQKNK KIENQIVKLK EKNVEKDMSN FMHKIHDDGK  120
SLSDFDASDL CRLLYYVERK LERVRVKAAH SQQQLSPNPP TPPVSLQNDI DFWANLDEQV  180
LEQSFLDLLK EDGMMNSGFD NNIGSNMGLP PFPQHLGDVD MVLPQDNIEG FNLGDIDMVL  240
PPGNFGGLID ESGLESGVLP QGNFIDLNGH SDSGLLYGSS SSEIGGSDIW PIYGNFGGTI  300
GGSDMMLPFS NFEGNICGTF MGGSINNIGL WSHQRNFGVG SSNPNFVGTN KSANATTSGC  360
RVDVLFLQ

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	74	102	RRRKNVNQQVYIEQKNKKIENQIVKLKEK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G65300.1	6e-24	M-type_MADS family protein