PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RDX72887.1

Organism

Mucuna pruriens

Taxonomic ID

157652

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Mucuna

Family

C3H

Protein Properties

Length: 481aa MW: 53067.6 Da PI: 8.3959

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RDX72887.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	34.3	4.1e-11	40	65	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++ C+++ rtG C++G++C+F+H++ RDX72887.1 40 QEPDCSYYIRTGLCRFGATCRFNHPR 65 6799********************96 PP
2	zf-CCCH	33.8	5.8e-11	70	89	8	27
GGGGTS--TTTTT-SS-SSS CS zf-CCCH 8 ffartGtCkyGdrCkFaHgp 27 ++++tGtCkyG++CkF+H++ RDX72887.1 70 YYMKTGTCKYGATCKFHHPK 89 8*****************96 PP
3	zf-CCCH	38.4	2.1e-12	111	135	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C +++rtG+Ck+G++CkF+H++ RDX72887.1 111 EPECTYYLRTGQCKFGNTCKFHHPQ 135 799********************97 PP
4	zf-CCCH	32.9	1.1e-10	270	296	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+f+ +tG Ck+G+ C+F+H++ RDX72887.1 270 PGQPECQFYTKTGDCKFGAVCRFHHPR 296 5789*********************96 PP
5	zf-CCCH	30.8	5.2e-10	321	342	6	27
-SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHgp 27 C f++r+G+Ck+G++CkF H++ RDX72887.1 321 CVFYSRYGICKFGPSCKFDHPM 342 99******************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 481 aa Download sequence
MISLVLCCSH IYDIISDPLW VVKLRCSEIM DSGPYPERPQ EPDCSYYIRT GLCRFGATCR 60 FNHPRNRKLY YMKTGTCKYG ATCKFHHPKD QAGIAGRIAL NILGYPLRPN EPECTYYLRT 120 GQCKFGNTCK FHHPQPSNMM LSLRGSPVYP TVQSPTTLGQ QSYAGGITDW SRASYIPSPR 180 WQGPSSYAPL ILPQGMVSLP GWSAYSGQMG SISTLDSPNQ AMRNGQTYGT SRQGELANAG 240 SYEAYSQFRS GTVPVGFYAL QRENIFPERP GQPECQFYTK TGDCKFGAVC RFHHPRERPL 300 PLPDCVLSPI GLPLRPGEPF CVFYSRYGIC KFGPSCKFDH PMGLFAYNIS ASPSVDASSK 360 HLLGSSSGTA ALNMSSKGLV EPSSTKPRQL SLSETRQIPS DDDDIDNDAN GGATSMQMMK 420 NENRRKLGSF QICALCTCCG GPKGICLPSP CCYAINCNIP NRPFGFCSFT PKTCNCFECH 480 L

Sequence ? help Back to Top

Protein Sequence Length: 481 aa Download sequence

MISLVLCCSH IYDIISDPLW VVKLRCSEIM DSGPYPERPQ EPDCSYYIRT GLCRFGATCR  60
FNHPRNRKLY YMKTGTCKYG ATCKFHHPKD QAGIAGRIAL NILGYPLRPN EPECTYYLRT  120
GQCKFGNTCK FHHPQPSNMM LSLRGSPVYP TVQSPTTLGQ QSYAGGITDW SRASYIPSPR  180
WQGPSSYAPL ILPQGMVSLP GWSAYSGQMG SISTLDSPNQ AMRNGQTYGT SRQGELANAG  240
SYEAYSQFRS GTVPVGFYAL QRENIFPERP GQPECQFYTK TGDCKFGAVC RFHHPRERPL  300
PLPDCVLSPI GLPLRPGEPF CVFYSRYGIC KFGPSCKFDH PMGLFAYNIS ASPSVDASSK  360
HLLGSSSGTA ALNMSSKGLV EPSSTKPRQL SLSETRQIPS DDDDIDNDAN GGATSMQMMK  420
NENRRKLGSF QICALCTCCG GPKGICLPSP CCYAINCNIP NRPFGFCSFT PKTCNCFECH  480
L

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02830.1	1e-149	C3H family protein