PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RDX73132.1

Organism

Mucuna pruriens

Taxonomic ID

157652

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Mucuna

Family

C3H

Protein Properties

Length: 745aa MW: 82039.3 Da PI: 8.2434

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RDX73132.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	24.5	4.9e-08	333	353	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ f++ GtC+ Gd+C +aHg RDX73132.1 333 PCPEFRK-GTCQKGDSCEYAHG 353 8****.***********9 PP

Sequence ? help Back to Top
Protein Sequence Length: 745 aa Download sequence
MKIKTKKTRK EKRKKKEQGN ALARSQENHN SRVHVRVKAA VEVPRGVSER AIDGGIWDMC 60 SDSKSKLSSP NHAMESNLLK QNLDGLYNFS VLLELSASDD FEAFKREVDE RGLDVNEAGF 120 WYGRRIGSKK MGSETRTPLM IASLFGSTKV LKYILEAGSV DVNRVCGSDR ATALHCAAAG 180 GSESSLEIVK LLLDAGADAE SLDASGNKPV NLIAPAFDSS SKSRRKAMEL FLRGGERDEF 240 IQEMELQMFS VPFSSKEGAE KKEGSDKKEY PVDISLPDIN NGVYGSDEFR MYSFKVKPCS 300 RAYSHDWTEC PFVHPGENAR RRDPRKYPYS CVPCPEFRKG TCQKGDSCEY AHGVFESWLH 360 PAQYRTRLCK DETGCTRKVC FFAHKPEELR PVYASTGSAM PSPKSYSTSA LDMTAMSPLS 420 LSSSSLPMPT VSTPPMSPLA AASSPKSGNL WQNKVNLTPP SLQLPGSRLK AALSARDLDL 480 EMELLGLESP ARQQQQQQQQ LIEEIARISS PSFRSKEFNR IGDLNPTNLD DLLASADPSV 540 LSQLHGLSVQ PSTPTQLQQS PSGLQMRQNM NHLRASYPSN IPSSPVRKPS AFGFDSSAAV 600 AAAVMNSRSA AFAKRSQSFI DRGAATHHLG LSSVSNPSCR VSSTLSDWSS PTGKLDWGVN 660 GDELNKLRKS ASFGFRNNGV TATASTRAQP EHVEPDVSWV HSLVRDVPSE RSEIFGAENQ 720 HYDLSKEMLS PWVEQLYIEQ EQMVA

Sequence ? help Back to Top

Protein Sequence Length: 745 aa Download sequence

MKIKTKKTRK EKRKKKEQGN ALARSQENHN SRVHVRVKAA VEVPRGVSER AIDGGIWDMC  60
SDSKSKLSSP NHAMESNLLK QNLDGLYNFS VLLELSASDD FEAFKREVDE RGLDVNEAGF  120
WYGRRIGSKK MGSETRTPLM IASLFGSTKV LKYILEAGSV DVNRVCGSDR ATALHCAAAG  180
GSESSLEIVK LLLDAGADAE SLDASGNKPV NLIAPAFDSS SKSRRKAMEL FLRGGERDEF  240
IQEMELQMFS VPFSSKEGAE KKEGSDKKEY PVDISLPDIN NGVYGSDEFR MYSFKVKPCS  300
RAYSHDWTEC PFVHPGENAR RRDPRKYPYS CVPCPEFRKG TCQKGDSCEY AHGVFESWLH  360
PAQYRTRLCK DETGCTRKVC FFAHKPEELR PVYASTGSAM PSPKSYSTSA LDMTAMSPLS  420
LSSSSLPMPT VSTPPMSPLA AASSPKSGNL WQNKVNLTPP SLQLPGSRLK AALSARDLDL  480
EMELLGLESP ARQQQQQQQQ LIEEIARISS PSFRSKEFNR IGDLNPTNLD DLLASADPSV  540
LSQLHGLSVQ PSTPTQLQQS PSGLQMRQNM NHLRASYPSN IPSSPVRKPS AFGFDSSAAV  600
AAAVMNSRSA AFAKRSQSFI DRGAATHHLG LSSVSNPSCR VSSTLSDWSS PTGKLDWGVN  660
GDELNKLRKS ASFGFRNNGV TATASTRAQP EHVEPDVSWV HSLVRDVPSE RSEIFGAENQ  720
HYDLSKEMLS PWVEQLYIEQ EQMVA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	2	15	KIKTKKTRKEKRKK
2	9	17	RKEKRKKKE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40140.2	0.0	C3H family protein