PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RDX74660.1

Organism

Mucuna pruriens

Taxonomic ID

157652

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Mucuna

Family

C3H

Protein Properties

Length: 406aa MW: 45577.4 Da PI: 6.7026

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RDX74660.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	27.3	6.5e-09	61	81	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C f+++ G C yG+rC++ H+ RDX74660.1 61 ICTFYQK-GVCAYGSRCRYDHV 81 7****.***********7 PP
2	zf-CCCH	18.2	4.5e-06	185	205	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ fa+ G C++G++C+ +Hg RDX74660.1 185 ICS-FAAAGNCPRGEKCPHIHG 205 677.**************9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 406 aa Download sequence
MNKPFLDVIT MLNSVLDYFS FCIFLSSESS RVLCKFFAHG ACLKGEHCEF SHDWKDPPNN 60 ICTFYQKGVC AYGSRCRYDH VKASQAQSST PSSSVIEHQT LVSDTVAFGN TKTTSNGVAT 120 AGEFSLSGNP YLLPSEPAWN QETAWNQEPA WNQELAWTQE FEYHELLGED NVGQSILTSP 180 SELSICSFAA AGNCPRGEKC PHIHGDLCPT CGKHCLHPFR PQEREEHMKS CENKHKHLEA 240 LKRSQEIECS VCLERVLSKP TAGERKFGLL SECDHPFCIS CIRNWRSSNP TLGMDVNSTL 300 RACPICRKLS YFVIPSVIWY STTEEKQEII DNYKAKLKSI DCKHFDFGDG NCPFGTSCFY 360 KHAYRDGHLE QVVLRHLGAA DGDTVIAKDI RGTRERSCTV HSVVNC

Sequence ? help Back to Top

Protein Sequence Length: 406 aa Download sequence

MNKPFLDVIT MLNSVLDYFS FCIFLSSESS RVLCKFFAHG ACLKGEHCEF SHDWKDPPNN  60
ICTFYQKGVC AYGSRCRYDH VKASQAQSST PSSSVIEHQT LVSDTVAFGN TKTTSNGVAT  120
AGEFSLSGNP YLLPSEPAWN QETAWNQEPA WNQELAWTQE FEYHELLGED NVGQSILTSP  180
SELSICSFAA AGNCPRGEKC PHIHGDLCPT CGKHCLHPFR PQEREEHMKS CENKHKHLEA  240
LKRSQEIECS VCLERVLSKP TAGERKFGLL SECDHPFCIS CIRNWRSSNP TLGMDVNSTL  300
RACPICRKLS YFVIPSVIWY STTEEKQEII DNYKAKLKSI DCKHFDFGDG NCPFGTSCFY  360
KHAYRDGHLE QVVLRHLGAA DGDTVIAKDI RGTRERSCTV HSVVNC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G08505.1	1e-156	C3H family protein