PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RDX82541.1

Organism

Mucuna pruriens

Taxonomic ID

157652

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Mucuna

Family

LSD

Protein Properties

Length: 135aa MW: 14152.6 Da PI: 8.0735

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RDX82541.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	42.4	1.1e-13	27	51	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gCr+lL YP GA+sV+Ca+C++V RDX82541.1 27 CSGCRNLLLYPVGATSVCCAVCNAV 51 ************************9 PP
2	zf-LSD1	45	1.8e-14	66	90	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggC+t L+Y rGA+sV+C++C+tV RDX82541.1 66 CGGCHTFLMYIRGATSVQCSCCHTV 90 ************************9 PP
3	zf-LSD1	37.4	4.2e-12	104	128	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+C+ lL+Y +GA+sV+Ca+C +V RDX82541.1 104 CGNCKMLLMYQYGARSVKCAVCSFV 128 **********************988 PP

Sequence ? help Back to Top
Protein Sequence Length: 135 aa Download sequence
MPVPLAPYPP PAPYTPPPNG AQSQLVCSGC RNLLLYPVGA TSVCCAVCNA VTTVPPPGTE 60 MAQLVCGGCH TFLMYIRGAT SVQCSCCHTV NLALEANQVA HVNCGNCKML LMYQYGARSV 120 KCAVCSFVTS VGHRT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32540.3	1e-62	LSD family protein