PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RDX84197.1

Organism

Mucuna pruriens

Taxonomic ID

157652

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Mucuna

Family

C3H

Protein Properties

Length: 471aa MW: 51482.2 Da PI: 5.1361

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RDX84197.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	32.3	1.7e-10	131	153	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 e C f+++tG Ck+G +CkF+H+ RDX84197.1 131 EDCAFYMKTGSCKFGFNCKFNHP 153 89********************8 PP
2	zf-CCCH	30.5	6.3e-10	176	199	2	25
-S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaH 25 +t++C++++r+G Ck+G +Ck++H RDX84197.1 176 GTAECKYYQRSGGCKFGKSCKYNH 199 79********************** PP
3	zf-CCCH	42	1.5e-13	222	246	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++++C++++rtG Ck+G++CkF+H+ RDX84197.1 222 GERECPYYMRTGSCKFGANCKFNHP 246 5799********************9 PP
4	zf-CCCH	27	7.7e-09	357	383	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C +f++tG Ck+ +CkF+H++ RDX84197.1 357 PGEPECTYFLKTGDCKFKTNCKFHHPK 383 5799*********************96 PP
5	zf-CCCH	34.9	2.6e-11	404	428	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ C +++r+G+Ck+G+ CkF H+ RDX84197.1 404 DQSVCTHYSRYGICKFGPACKFDHP 428 5789********************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 471 aa Download sequence
MEGSESDSAA LSIPNGEEPQ LGAPSSPGAH PQPSDLNHAA EEEEALAGEL QSKLDFMGAD 60 QSEEKVLNLN DAGEETGKGD EYSRSWESNC WNEEVGVDVD VDVDVDGDQV EIKEEKNSGV 120 THHYPLRPEA EDCAFYMKTG SCKFGFNCKF NHPIRRKTQG FKEKAGEREE PTERSGTAEC 180 KYYQRSGGCK FGKSCKYNHT RGKISTAPVL ELNFLGLPIR LGERECPYYM RTGSCKFGAN 240 CKFNHPDPTA VGGCDPPSGY GNGGSISLQG VSQPSVPSWS SPRTLNDASP FVPMMLSPSQ 300 GVSTQSSDWN GYQASVYLPE RSMHPPSTFV MNNPAIDTNV YMHPQKQMPV EEFPERPGEP 360 ECTYFLKTGD CKFKTNCKFH HPKNRIARLP PCDLSDKGLP LRPDQSVCTH YSRYGICKFG 420 PACKFDHPIN LQPLLMPGLG QQSYSNSASV EVAGIGGSAG ATDATIQQSV F

Sequence ? help Back to Top

Protein Sequence Length: 471 aa Download sequence

MEGSESDSAA LSIPNGEEPQ LGAPSSPGAH PQPSDLNHAA EEEEALAGEL QSKLDFMGAD  60
QSEEKVLNLN DAGEETGKGD EYSRSWESNC WNEEVGVDVD VDVDVDGDQV EIKEEKNSGV  120
THHYPLRPEA EDCAFYMKTG SCKFGFNCKF NHPIRRKTQG FKEKAGEREE PTERSGTAEC  180
KYYQRSGGCK FGKSCKYNHT RGKISTAPVL ELNFLGLPIR LGERECPYYM RTGSCKFGAN  240
CKFNHPDPTA VGGCDPPSGY GNGGSISLQG VSQPSVPSWS SPRTLNDASP FVPMMLSPSQ  300
GVSTQSSDWN GYQASVYLPE RSMHPPSTFV MNNPAIDTNV YMHPQKQMPV EEFPERPGEP  360
ECTYFLKTGD CKFKTNCKFH HPKNRIARLP PCDLSDKGLP LRPDQSVCTH YSRYGICKFG  420
PACKFDHPIN LQPLLMPGLG QQSYSNSASV EVAGIGGSAG ATDATIQQSV F

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63260.1	1e-134	C3H family protein