PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RDX87830.1

Organism

Mucuna pruriens

Taxonomic ID

157652

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Mucuna

Family

C3H

Protein Properties

Length: 408aa MW: 44718.4 Da PI: 8.3302

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RDX87830.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	35.7	1.4e-11	39	65	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C+++ rtG C++G++C+F+H+p RDX87830.1 39 PGEPDCSYYIRTGLCRFGATCRFNHPP 65 5789*********************97 PP
2	zf-CCCH	22.8	1.6e-07	77	92	11	27
GTS--TTTTT-SS-SSS CS zf-CCCH 11 rtGtCkyGdrCkFaHgp 27 + GtCk+G++C+F+H++ RDX87830.1 77 K-GTCKFGATCRFHHPR 92 4.9************96 PP
3	zf-CCCH	37.5	3.9e-12	114	138	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C +++rtG+Ck+G++CkF+H++ RDX87830.1 114 EPECAYYLRTGQCKFGNTCKFHHPQ 138 799********************97 PP
4	zf-CCCH	38.6	1.8e-12	270	295	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+f+++tG Ck+G+ C+F+H++ RDX87830.1 270 DQPECQFYMKTGDCKFGAVCRFHHPR 295 689*********************96 PP
5	zf-CCCH	38.2	2.4e-12	315	341	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++lC f++r+G+Ck+G++CkF H++ RDX87830.1 315 PGEPLCVFYSRYGICKFGPSCKFDHPM 341 589**********************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 408 aa Download sequence
MMSLFENLTC SYHVISDAMW QINLRSSETM ESGPYPEHPG EPDCSYYIRT GLCRFGATCR 60 FNHPPNRKLA IAAARMKGTC KFGATCRFHH PRDKAGIAGR VALNILGYPL RPNEPECAYY 120 LRTGQCKFGN TCKFHHPQPN NMVLSMRSSP VYPTVHSPTT PGQQSYATGI TNWSSSSYIP 180 SPRWQGPSSY APLILPQGMV SVPGWNAYSG QMGSDSPQQT MGNGQSYGTS RQNEPANAGS 240 QGAYSQFRSG SVPVGFYALP RENIFPERPD QPECQFYMKT GDCKFGAVCR FHHPRERMIP 300 APDCVLSPIG LPLRPGEPLC VFYSRYGICK FGPSCKFDHP MGVFTYNISA SPSADAPGRR 360 MLGSSSGTAA LNLSSEGLVE SGSAKPRRLS LSETRQIPSG DDDIDEEG

Sequence ? help Back to Top

Protein Sequence Length: 408 aa Download sequence

MMSLFENLTC SYHVISDAMW QINLRSSETM ESGPYPEHPG EPDCSYYIRT GLCRFGATCR  60
FNHPPNRKLA IAAARMKGTC KFGATCRFHH PRDKAGIAGR VALNILGYPL RPNEPECAYY  120
LRTGQCKFGN TCKFHHPQPN NMVLSMRSSP VYPTVHSPTT PGQQSYATGI TNWSSSSYIP  180
SPRWQGPSSY APLILPQGMV SVPGWNAYSG QMGSDSPQQT MGNGQSYGTS RQNEPANAGS  240
QGAYSQFRSG SVPVGFYALP RENIFPERPD QPECQFYMKT GDCKFGAVCR FHHPRERMIP  300
APDCVLSPIG LPLRPGEPLC VFYSRYGICK FGPSCKFDHP MGVFTYNISA SPSADAPGRR  360
MLGSSSGTAA LNLSSEGLVE SGSAKPRRLS LSETRQIPSG DDDIDEEG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02830.1	1e-166	C3H family protein