PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RDX89221.1

Organism

Mucuna pruriens

Taxonomic ID

157652

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Mucuna

Family

LSD

Protein Properties

Length: 215aa MW: 22721.3 Da PI: 6.4619

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RDX89221.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	40.5	4.6e-13	96	120	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gCr+lL YP GA+sV+Ca+C++V RDX89221.1 96 CSGCRNLLVYPVGATSVCCAVCNAV 120 ************************9 PP
2	zf-LSD1	46	8.6e-15	135	159	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggC+tlL+Y rGA+sV+C++C+tV RDX89221.1 135 CGGCHTLLMYIRGATSVQCSCCHTV 159 ************************9 PP
3	zf-LSD1	41.1	3e-13	173	197	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Cr lL+Y +GA+sV+Ca+C++V RDX89221.1 173 CGNCRMLLMYQYGARSVKCAVCNFV 197 ***********************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 215 aa Download sequence
LQNTSSSDQA ITLIPSGLYL SAKEEAPHLT LTLPFDLLAP SASRLSLELK IWETVTLAEK 60 DNIFESFIMP VPLAPYPTPP APYTPPANGA QSQLVCSGCR NLLVYPVGAT SVCCAVCNAV 120 TAVPPPGTEM AQLVCGGCHT LLMYIRGATS VQCSCCHTVN LALEANQVAH VNCGNCRMLL 180 MYQYGARSVK CAVCNFVTSV GVSATASTTE QKFST

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32540.3	1e-59	LSD family protein