PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RDX91346.1

Organism

Mucuna pruriens

Taxonomic ID

157652

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Mucuna

Family

C3H

Protein Properties

Length: 846aa MW: 93308.2 Da PI: 8.6935

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RDX91346.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	21.8	3.2e-07	152	174	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 t +Cr+fa+ G C++G+ C+F H RDX91346.1 152 TQPCRDFAA-GKCRRGSHCHFLHH 174 789****.***********6 PP
2	zf-CCCH	19.6	1.6e-06	213	234	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 e C +fa+ G C+ G++CkF H RDX91346.1 213 EACINFAK-GRCRMGASCKFVHH 234 78****.***********5 PP
3	zf-CCCH	19.9	1.3e-06	278	298	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 lC+ffa G C+ G C+F+H+ RDX91346.1 278 LCKFFAN-GNCRNGKFCRFSHD 298 98888.***********7 PP

Sequence ? help Back to Top
Protein Sequence Length: 846 aa Download sequence
MSGSSKKRSS KWDLKVESEF APDDSKQLRS GRSSADVAGS NSSKWSYLEG SDKLKPGMGF 60 SSKEPFSGGR GSNKDDIMNE DYRVLDSTME WDEDGSYNKK ISPGFEEWKH KRHSQSPKNG 120 WSRSSRSRSP PHGFKWDSGV NDRNRMRAGG STQPCRDFAA GKCRRGSHCH FLHHDNQNHE 180 DSWENKCRED GAPRYSAPHE SRDYSLKSGR SNEACINFAK GRCRMGASCK FVHHNNSDGH 240 GKVSVDEVTR DREIDRRNRD NSFEQGGGHG PNRNGDTLCK FFANGNCRNG KFCRFSHDRQ 300 ACRSPNRRSR DDRWASNPGG DHHLLDRPKL SGSVSPNRRP RDDRWGSDGN KADADKVWNS 360 SKQNDTVVSD TAKLVEDKSE NVDAAEPGFA PLPTRDGWGH SLDKSRVHGE QPFSSDKKEA 420 DSWIAGNTAA NMNGSQSIGA DIWLGDAKMS PDWDYKVGSS SCIKEKHEQN KHGIRQGGMY 480 LASSEHDRIQ IAPGQGFNQN AESLNPMHSS SCQAIGQSQV AVPILPSKGG IVDGMPNQEV 540 STEKKYTAEP NIMDAGLSQV SSRNPPPTEN VVGKEQLAQL TNLSASLAHI LGTGQQLPQL 600 YAALNSHDAK DTSSLAKTEV PAMPVSNTFI RPDPAARLTK QYDPMCDSLE PKSAVTSGVP 660 PAVPPSKKVA EDVVEIPLSN MARQNFGDSS KAAGLEELVK SDPLIQLQPG QNTRANKDSN 720 KEVLPDERLK SQDDSKSTKE NGPLENMDQT GGPDEAKKPK DMKGSRAFKF ALVEFVKELL 780 KPTWKEGQIT KEDYKTIVKK VVDKVTGSMQ GASIPQTQEK IDHYLSFSKP KLNKLVQAYV 840 EKVQKA

Sequence ? help Back to Top

Protein Sequence Length: 846 aa Download sequence

MSGSSKKRSS KWDLKVESEF APDDSKQLRS GRSSADVAGS NSSKWSYLEG SDKLKPGMGF  60
SSKEPFSGGR GSNKDDIMNE DYRVLDSTME WDEDGSYNKK ISPGFEEWKH KRHSQSPKNG  120
WSRSSRSRSP PHGFKWDSGV NDRNRMRAGG STQPCRDFAA GKCRRGSHCH FLHHDNQNHE  180
DSWENKCRED GAPRYSAPHE SRDYSLKSGR SNEACINFAK GRCRMGASCK FVHHNNSDGH  240
GKVSVDEVTR DREIDRRNRD NSFEQGGGHG PNRNGDTLCK FFANGNCRNG KFCRFSHDRQ  300
ACRSPNRRSR DDRWASNPGG DHHLLDRPKL SGSVSPNRRP RDDRWGSDGN KADADKVWNS  360
SKQNDTVVSD TAKLVEDKSE NVDAAEPGFA PLPTRDGWGH SLDKSRVHGE QPFSSDKKEA  420
DSWIAGNTAA NMNGSQSIGA DIWLGDAKMS PDWDYKVGSS SCIKEKHEQN KHGIRQGGMY  480
LASSEHDRIQ IAPGQGFNQN AESLNPMHSS SCQAIGQSQV AVPILPSKGG IVDGMPNQEV  540
STEKKYTAEP NIMDAGLSQV SSRNPPPTEN VVGKEQLAQL TNLSASLAHI LGTGQQLPQL  600
YAALNSHDAK DTSSLAKTEV PAMPVSNTFI RPDPAARLTK QYDPMCDSLE PKSAVTSGVP  660
PAVPPSKKVA EDVVEIPLSN MARQNFGDSS KAAGLEELVK SDPLIQLQPG QNTRANKDSN  720
KEVLPDERLK SQDDSKSTKE NGPLENMDQT GGPDEAKKPK DMKGSRAFKF ALVEFVKELL  780
KPTWKEGQIT KEDYKTIVKK VVDKVTGSMQ GASIPQTQEK IDHYLSFSKP KLNKLVQAYV  840
EKVQKA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33835.1	6e-13	C3H family protein