PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RDX92288.1

Organism

Mucuna pruriens

Taxonomic ID

157652

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Mucuna

Family

M-type_MADS

Protein Properties

Length: 383aa MW: 43512.2 Da PI: 6.6345

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RDX92288.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	50.2	3.4e-16	27	68	3	44
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44 i n+s+r++t+ kR++g++KK E+SvLC++e++ ii+ +++ RDX92288.1 27 ITNDSKRKTTLRKRKTGLIKKIGEISVLCGVEACAIIYTPNN 68 89************************************9986 PP
2	SRF-TF	26.2	1e-08	237	263	18	44
HHHHHHHHHHHHHHT-EEEEEEE-TTS CS SRF-TF 18 ngilKKAeELSvLCdaevaviifsstg 44 g++KK E+SvLC++e++ ii+ +++ RDX92288.1 237 SGLIKKIGEISVLCGIEACAIIYTPNN 263 69*********************9986 PP

Sequence ? help Back to Top
Protein Sequence Length: 383 aa Download sequence
MKNSAFFLYL PHMVTIMTRK KVELTYITND SKRKTTLRKR KTGLIKKIGE ISVLCGVEAC 60 AIIYTPNNPQ PEVWPSNSGL QSVLSRFRGV SELEQSKKML SQESFMRKTV IKAQEQLKKL 120 KYDNRKKEMT IHMFHHFNGG NIFDNANMID LNDIAYLTYQ KLEEIKMNMN MIQAQEVTPV 180 VENGGEIMTQ GEQAVVNPVQ GPETNVDIME TLNWCMDIIN GGGEDDMFTF EDVDVQSGLI 240 KKIGEISVLC GIEACAIIYT PNNPQPEVWP SDTGVQTVLS KFKKVTELEQ SKKMLIQEGI 300 LRKTVIKAQD QLKKLKYENR KKEMTIHMFQ HFNAGNNFGN ADIIDLNDIS YMTDQNLEEI 360 HMKINMSQAQ EVTPLVQNGG GGD

Sequence ? help Back to Top

Protein Sequence Length: 383 aa Download sequence

MKNSAFFLYL PHMVTIMTRK KVELTYITND SKRKTTLRKR KTGLIKKIGE ISVLCGVEAC  60
AIIYTPNNPQ PEVWPSNSGL QSVLSRFRGV SELEQSKKML SQESFMRKTV IKAQEQLKKL  120
KYDNRKKEMT IHMFHHFNGG NIFDNANMID LNDIAYLTYQ KLEEIKMNMN MIQAQEVTPV  180
VENGGEIMTQ GEQAVVNPVQ GPETNVDIME TLNWCMDIIN GGGEDDMFTF EDVDVQSGLI  240
KKIGEISVLC GIEACAIIYT PNNPQPEVWP SDTGVQTVLS KFKKVTELEQ SKKMLIQEGI  300
LRKTVIKAQD QLKKLKYENR KKEMTIHMFQ HFNAGNNFGN ADIIDLNDIS YMTDQNLEEI  360
HMKINMSQAQ EVTPLVQNGG GGD

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	19	41	RKKVELTYITNDSKRKTTLRKRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G48670.1	4e-39	M-type_MADS family protein