PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RDX93558.1

Organism

Mucuna pruriens

Taxonomic ID

157652

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Mucuna

Family

MYB_related

Protein Properties

Length: 601aa MW: 66779.9 Da PI: 7.1065

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RDX93558.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	23.7	8.4e-08	129	149	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C+ f++ G Ck Gd+C FaHg RDX93558.1 129 ACPEFRK-GNCKKGDTCEFAHG 149 7****.***********9 PP
2	Myb_DNA-binding	48.5	2.1e-15	374	422	1	48
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 rg+W+++Ed l+++ +++G+g +W + +++ g++R++k+c++rw++yl RDX93558.1 374 RGPWSPDEDATLKNYLEKHGTGgNWIALPKKAGLKRCGKSCRLRWLNYL 422 89*********************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 601 aa Download sequence
MMLGERHRAN PTVHVPPWSA HDDPTAEMYS AFLSNDVNAA EYSPYYLQEA LTALQRYLPS 60 NETDPDSDSE VTLDAPVDAY SCDHFRMFEF KVRRCARGRS HDWTECPYAH PGEKARRRDP 120 RKFHYSGTAC PEFRKGNCKK GDTCEFAHGV FECWLHPARY RTQPCKDGTS CRRRVCFFAH 180 TPEQLRLVPV QSPRSVNSAE SYDGSPMRQV SMQQFVSSSP ASVSPPESPP VSPSINEMVA 240 NLRNLQLGKV KSMPPNRNVT AGSPGFGSPC FGSPRGSVLR PGFCSLPSTP TQQPVRSGVN 300 YFDLWDNSCC EEEPVMERVE SGRGIRAKMF EKLSKENSLD GSGLAQTSGA PDVGWVSELA 360 MGRAPCCDKS NVKRGPWSPD EDATLKNYLE KHGTGGNWIA LPKKAGLKRC GKSCRLRWLN 420 YLRPHIKLGA QLPGRTDNDV KNHWNTKLKK KFLSENTSVA PSNNGTISNT SYSDPFSAFT 480 LQPSVEAFVL DQKLNSVWFD SNNVLDLEQK PIPLPFPMPQ ELEAFNTGSS CSAPLPKEAS 540 MLSNAACLAQ FGYDYAGEED PNLLEFVLDD LLNHGFASQD KSSEVAPSYL ANQDFFYSSK 600 T

Sequence ? help Back to Top

Protein Sequence Length: 601 aa Download sequence

MMLGERHRAN PTVHVPPWSA HDDPTAEMYS AFLSNDVNAA EYSPYYLQEA LTALQRYLPS  60
NETDPDSDSE VTLDAPVDAY SCDHFRMFEF KVRRCARGRS HDWTECPYAH PGEKARRRDP  120
RKFHYSGTAC PEFRKGNCKK GDTCEFAHGV FECWLHPARY RTQPCKDGTS CRRRVCFFAH  180
TPEQLRLVPV QSPRSVNSAE SYDGSPMRQV SMQQFVSSSP ASVSPPESPP VSPSINEMVA  240
NLRNLQLGKV KSMPPNRNVT AGSPGFGSPC FGSPRGSVLR PGFCSLPSTP TQQPVRSGVN  300
YFDLWDNSCC EEEPVMERVE SGRGIRAKMF EKLSKENSLD GSGLAQTSGA PDVGWVSELA  360
MGRAPCCDKS NVKRGPWSPD EDATLKNYLE KHGTGGNWIA LPKKAGLKRC GKSCRLRWLN  420
YLRPHIKLGA QLPGRTDNDV KNHWNTKLKK KFLSENTSVA PSNNGTISNT SYSDPFSAFT  480
LQPSVEAFVL DQKLNSVWFD SNNVLDLEQK PIPLPFPMPQ ELEAFNTGSS CSAPLPKEAS  540
MLSNAACLAQ FGYDYAGEED PNLLEFVLDD LLNHGFASQD KSSEVAPSYL ANQDFFYSSK  600
T

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G19810.1	1e-125	C3H family protein