PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RDX93871.1

Organism

Mucuna pruriens

Taxonomic ID

157652

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Mucuna

Family

C3H

Protein Properties

Length: 494aa MW: 53896.9 Da PI: 7.7378

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RDX93871.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	33.5	7e-11	130	154	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ C +++ t tCk+Gd+CkF H+ RDX93871.1 130 GEKDCAHYMLTRTCKFGDSCKFDHP 154 7889********************8 PP
2	zf-CCCH	34.8	2.8e-11	181	207	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C++f++t Ck+G++CkF+H++ RDX93871.1 181 PGEPDCPYFLKTQRCKFGSKCKFNHPK 207 5789*********************96 PP
3	zf-CCCH	38.7	1.7e-12	225	249	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C f+++tG Ck+G+ CkF+H++ RDX93871.1 225 EPPCAFYMKTGKCKFGAACKFHHPK 249 79*********************96 PP
4	zf-CCCH	40.3	5.1e-13	302	325	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 ++ C+f+++tG CkyG++C+++H+ RDX93871.1 302 EVDCPFYMKTGSCKYGATCRYNHP 325 689********************9 PP
5	zf-CCCH	39.4	1e-12	386	409	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 + +C+f+++tG+Ck+G+rCk++H+ RDX93871.1 386 QIECDFYMKTGECKFGERCKYHHP 409 568********************8 PP
6	zf-CCCH	40.7	4.1e-13	437	460	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 ++C+++++tGtCk+G++CkF H+p RDX93871.1 437 VICPYYLKTGTCKFGATCKFDHPP 460 68********************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 494 aa Download sequence
MDNHIYASSY SPSTNYRFLD TEASAATMFL SHHRSDAALR FPSASVDADI APPGVTSRIT 60 SSAAANLLSS WPPAAAHSAL DLKRSSDALY HPTILGTIGQ SEAWYSTNSL AKRPRYESAS 120 NIPMYPQRPG EKDCAHYMLT RTCKFGDSCK FDHPIWVPEG GIPDWKEVPN VVTSDTPPER 180 PGEPDCPYFL KTQRCKFGSK CKFNHPKVSS ENADVSSGLP DRPSEPPCAF YMKTGKCKFG 240 AACKFHHPKD IQIQLSDDLS HTVSQKLTNS MMGGATGDTQ PIKSLISPSM QNSKGLPVRL 300 GEVDCPFYMK TGSCKYGATC RYNHPDRNAI NPSIAALGPS ILPSSTANLN IGVLNPAVSV 360 YQAFDPRLSN PMMGIAETLY PQRPGQIECD FYMKTGECKF GERCKYHHPI DRSAPSLSKQ 420 ATVKLTPAGL PRREGAVICP YYLKTGTCKF GATCKFDHPP PGEVMEMAKS QGTSANGGEE 480 AESDEKETFA PEQH

Sequence ? help Back to Top

Protein Sequence Length: 494 aa Download sequence

MDNHIYASSY SPSTNYRFLD TEASAATMFL SHHRSDAALR FPSASVDADI APPGVTSRIT  60
SSAAANLLSS WPPAAAHSAL DLKRSSDALY HPTILGTIGQ SEAWYSTNSL AKRPRYESAS  120
NIPMYPQRPG EKDCAHYMLT RTCKFGDSCK FDHPIWVPEG GIPDWKEVPN VVTSDTPPER  180
PGEPDCPYFL KTQRCKFGSK CKFNHPKVSS ENADVSSGLP DRPSEPPCAF YMKTGKCKFG  240
AACKFHHPKD IQIQLSDDLS HTVSQKLTNS MMGGATGDTQ PIKSLISPSM QNSKGLPVRL  300
GEVDCPFYMK TGSCKYGATC RYNHPDRNAI NPSIAALGPS ILPSSTANLN IGVLNPAVSV  360
YQAFDPRLSN PMMGIAETLY PQRPGQIECD FYMKTGECKF GERCKYHHPI DRSAPSLSKQ  420
ATVKLTPAGL PRREGAVICP YYLKTGTCKF GATCKFDHPP PGEVMEMAKS QGTSANGGEE  480
AESDEKETFA PEQH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12680.1	0.0	C3H family protein