PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RDY00318.1

Organism

Mucuna pruriens

Taxonomic ID

157652

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Mucuna

Family

C3H

Protein Properties

Length: 343aa MW: 38859.3 Da PI: 7.4557

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RDY00318.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	38.1	2.6e-12	208	233	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 y +C+++ +tG+C yGd+CkF+H+ RDY00318.1 208 YQPDICKDYKETGYCGYGDSCKFMHD 233 67789********************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 343 aa Download sequence
MNILSGWLMR AGQGQLIDSD QPDKSSENQQ TEQVCSFFRK PVNKKNIRKR TIDNEDNEEN 60 SNKETSLLHI QKKTSKPDNK LYFSTGSSKS SASAEPSEES GKPVFQFQSS KEIQVQHDSK 120 ATAILETETE FSKDARAIRE RSLKQAAESL KGKSTSSEGE KLYKGMNSYT DYKAGFRREQ 180 TIASEKAGGA HGPLRASAHI RVSARFDYQP DICKDYKETG YCGYGDSCKF MHDRGDYKPG 240 WQLEKEWEEA EKARKMRLAA GEDEDEGGAN LTDEDDDDSL PFACFICRKP FVDPVVTKCK 300 HYFCEHCALK HHAKNKKCFV CNQPTLGIFN VAHEIRRKMA EDK

Sequence ? help Back to Top

Protein Sequence Length: 343 aa Download sequence

MNILSGWLMR AGQGQLIDSD QPDKSSENQQ TEQVCSFFRK PVNKKNIRKR TIDNEDNEEN  60
SNKETSLLHI QKKTSKPDNK LYFSTGSSKS SASAEPSEES GKPVFQFQSS KEIQVQHDSK  120
ATAILETETE FSKDARAIRE RSLKQAAESL KGKSTSSEGE KLYKGMNSYT DYKAGFRREQ  180
TIASEKAGGA HGPLRASAHI RVSARFDYQP DICKDYKETG YCGYGDSCKF MHDRGDYKPG  240
WQLEKEWEEA EKARKMRLAA GEDEDEGGAN LTDEDDDDSL PFACFICRKP FVDPVVTKCK  300
HYFCEHCALK HHAKNKKCFV CNQPTLGIFN VAHEIRRKMA EDK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G01350.1	1e-149	C3H family protein