PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RDY00509.1

Organism

Mucuna pruriens

Taxonomic ID

157652

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Mucuna

Family

M-type_MADS

Protein Properties

Length: 363aa MW: 41088.8 Da PI: 7.4779

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RDY00509.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	68.7	5.6e-22	36	79	2	45
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 + e+ snr+vt+skR+ gi KKA+ELS+LCd+++++++fs+tgk RDY00509.1 36 KLESISNRHVTYSKRKSGIVKKAKELSILCDIDILLLMFSPTGK 79 57899*************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 363 aa Download sequence
MCVELGWFPK LYPPKSQLHL SSCNNLMGRV KLKIKKLESI SNRHVTYSKR KSGIVKKAKE 60 LSILCDIDIL LLMFSPTGKP TLLQGERSNI EEVIAKFAQL SPQERAKRKM ESLEALKKTF 120 KKLDHDVKIQ DFLGSSYWNN LEKINNLEHL RQMEDSLRES INRVCLQKEN LGKHQLISLE 180 CANQMQEGMT LPLMMASLQE SQPLSWLLNN DNHQLMLPSE PNDNTNRDAE CSTDISLPSY 240 SGYIGNSKLE VGSSPQVTTT LCQGGGAMNE LNGTTYLNVQ RCDQFAYPPP PDIEEVKHFP 300 TMNSKSNTVD YQVNNSFDLP RSLFENGHQF WNSASGSCGI AMYNENCYHR GKHTVGSNCH 360 VEI

Sequence ? help Back to Top

Protein Sequence Length: 363 aa Download sequence

MCVELGWFPK LYPPKSQLHL SSCNNLMGRV KLKIKKLESI SNRHVTYSKR KSGIVKKAKE  60
LSILCDIDIL LLMFSPTGKP TLLQGERSNI EEVIAKFAQL SPQERAKRKM ESLEALKKTF  120
KKLDHDVKIQ DFLGSSYWNN LEKINNLEHL RQMEDSLRES INRVCLQKEN LGKHQLISLE  180
CANQMQEGMT LPLMMASLQE SQPLSWLLNN DNHQLMLPSE PNDNTNRDAE CSTDISLPSY  240
SGYIGNSKLE VGSSPQVTTT LCQGGGAMNE LNGTTYLNVQ RCDQFAYPPP PDIEEVKHFP  300
TMNSKSNTVD YQVNNSFDLP RSLFENGHQF WNSASGSCGI AMYNENCYHR GKHTVGSNCH  360
VEI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18750.1	4e-69	M-type_MADS family protein