PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RDY01407.1

Organism

Mucuna pruriens

Taxonomic ID

157652

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Mucuna

Family

C3H

Protein Properties

Length: 311aa MW: 33393.1 Da PI: 9.6061

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RDY01407.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	30.7	5.4e-10	118	142	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 kt+lC+ f Ck+GdrC+FaHg RDY01407.1 118 KTRLCNKFNMAEGCKFGDRCHFAHG 142 8***********************9 PP
2	zf-CCCH	37.4	4.3e-12	278	302	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt+lC +fa+ G C +GdrC+FaHg RDY01407.1 278 FKTKLCENFAK-GSCTFGDRCHFAHG 302 69*******.***********9 PP

Sequence ? help Back to Top
Protein Sequence Length: 311 aa Download sequence
MCVVLKPERL GFKVYSALRI GMDRKRARPE AAFNVNGPAK KSRPETDSLP TGLGSKLKPC 60 TNTSGCPFGE GCHFLHYVPG GFNVVSQLIN VGSIPAIPHG RNPVPPSFPD GSSPPVVKTR 120 LCNKFNMAEG CKFGDRCHFA HGDWELGRPT VPSYEDPRVL GQMPNSRLGG RLEPPLPASA 180 SFGASATAKI SINASLAGAV IGKNGVNSKQ ICRVTGSRLS IRDHDSDPNL RNIELEGSFD 240 QIKQASAMVH ELILNLTSAF GPPIKSFTTQ TSSPSGNFKT KLCENFAKGS CTFGDRCHFA 300 HGTDELRKFG I

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06770.1	6e-73	C3H family protein