PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RDY03485.1

Organism

Mucuna pruriens

Taxonomic ID

157652

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Mucuna

Family

C3H

Protein Properties

Length: 339aa MW: 35953.4 Da PI: 10.0594

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RDY03485.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	28.1	3.4e-09	147	172	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 kt++C+ f Ck+Gd+C+FaHg+ RDY03485.1 147 KTRICNKFNTAEGCKFGDKCHFAHGE 172 8***********************96 PP
2	zf-CCCH	35.5	1.7e-11	308	332	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt+lC +fa+ G C +G+rC+FaHg RDY03485.1 308 FKTKLCENFAK-GSCTFGERCHFAHG 332 69*******.***********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 339 aa Download sequence
ILFFSLLRTL LGLTSPHLTT PHPNPTLSYQ KPLSLRQLGF CGSRSVSMDV RKRGRHEAAV 60 NLNGAVKKNK QELESLSSGV GSKSKPCTKF FSTAGCPFGE GCHFLHYVPG GYNAVAHMMN 120 LKPAAPPPRT VAAPPPVPNG SAPSAVKTRI CNKFNTAEGC KFGDKCHFAH GEWELGKPIA 180 PSIDDHRPMG PPAASRMVGR IEPPPGLAAS FGAISTAKIS VEASLAGAII GKGGVNSKQI 240 CRQTGAKLSI REHESDPNLR NIELEGTFEQ IKEASNMVKD LLLTVSMSAP PKSTPGVPGA 300 PAPPGSNFKT KLCENFAKGS CTFGERCHFA HGATELRKT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12130.1	6e-61	C3H family protein