PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RDY04776.1

Organism

Mucuna pruriens

Taxonomic ID

157652

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Mucuna

Family

C3H

Protein Properties

Length: 494aa MW: 54011.1 Da PI: 4.6265

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RDY04776.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	29.9	9.6e-10	158	180	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 e C f+++tG Ck+G +CkF+H+ RDY04776.1 158 EDCAFYLKTGNCKFGFNCKFNHP 180 89********************9 PP
2	zf-CCCH	30	9.1e-10	205	226	4	25
---SGGGGTS--TTTTT-SS-S CS zf-CCCH 4 elCrffartGtCkyGdrCkFaH 25 +C++++r+G Ck+G CkF+H RDY04776.1 205 TECKYYLRSGGCKFGKACKFNH 226 68******************** PP
3	zf-CCCH	38.7	1.6e-12	250	273	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 +++C++++rtG Ck+G++CkF+H+ RDY04776.1 250 EKECHYYMRTGSCKFGANCKFNHP 273 679********************9 PP
4	zf-CCCH	29.3	1.4e-09	384	410	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C++f++tG Ck+ ++CkF+H++ RDY04776.1 384 PGEPECSYFLKTGDCKFKSNCKFHHPK 410 5799*********************96 PP
5	zf-CCCH	33.3	8.1e-11	432	455	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 + C +++r+G Ck+G+ CkF H+ RDY04776.1 432 QNVCTYYSRYGLCKFGPACKFDHP 455 568********************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 494 aa Download sequence
MEPFESESVS SSTKDPQLGV PSSPVHPLDH DPQPSDLNHV TQVDDALGLG EELQNKLDLK 60 DGDETENKGS NLEDGGENLS DEAAAPEDGK GEGCDDVVVV GGDDDDGCNG GDEGCECIEN 120 VNDESESDKV DGDVDGVENR DERSSGRAQQ YPLRPEAEDC AFYLKTGNCK FGFNCKFNHP 180 LRRKNQARKE NEGEREEQAE RSEQTECKYY LRSGGCKFGK ACKFNHTKGK YSASPIVDLN 240 FLGLPIRVGE KECHYYMRTG SCKFGANCKF NHPDPTAVGG GDSPSGYGNG SSISLQGVSQ 300 SSISQWSSTR TLNESTPFVP VILSPNPGVS PRSSEWNGYQ APVYLSERSL HPPSTYVINN 360 PAMETNVYMH HPKQMQVEEF PERPGEPECS YFLKTGDCKF KSNCKFHHPK NRIARLPPCN 420 LSDKGLPLRP DQNVCTYYSR YGLCKFGPAC KFDHPINPPP STMPGLDQQS SYTNSASVDV 480 AENGGASDGN QQSV

Sequence ? help Back to Top

Protein Sequence Length: 494 aa Download sequence

MEPFESESVS SSTKDPQLGV PSSPVHPLDH DPQPSDLNHV TQVDDALGLG EELQNKLDLK  60
DGDETENKGS NLEDGGENLS DEAAAPEDGK GEGCDDVVVV GGDDDDGCNG GDEGCECIEN  120
VNDESESDKV DGDVDGVENR DERSSGRAQQ YPLRPEAEDC AFYLKTGNCK FGFNCKFNHP  180
LRRKNQARKE NEGEREEQAE RSEQTECKYY LRSGGCKFGK ACKFNHTKGK YSASPIVDLN  240
FLGLPIRVGE KECHYYMRTG SCKFGANCKF NHPDPTAVGG GDSPSGYGNG SSISLQGVSQ  300
SSISQWSSTR TLNESTPFVP VILSPNPGVS PRSSEWNGYQ APVYLSERSL HPPSTYVINN  360
PAMETNVYMH HPKQMQVEEF PERPGEPECS YFLKTGDCKF KSNCKFHHPK NRIARLPPCN  420
LSDKGLPLRP DQNVCTYYSR YGLCKFGPAC KFDHPINPPP STMPGLDQQS SYTNSASVDV  480
AENGGASDGN QQSV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48440.1	1e-120	C3H family protein