PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RDY10356.1

Organism

Mucuna pruriens

Taxonomic ID

157652

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Mucuna

Family

M-type_MADS

Protein Properties

Length: 650aa MW: 75487.1 Da PI: 8.9333

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RDY10356.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	50.8	2.2e-16	55	95	2	42
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42 +i n+s r+ t+ kR++g+lKK eELS+LC++e++ i++s+ RDY10356.1 55 FIANDSARKATYKKRKQGMLKKIEELSILCGIEACAIVYSP 95 699************************************98 PP
2	SRF-TF	48.9	8.4e-16	288	328	2	42
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42 +i n+s r+ t kR++g+lKK eELS+LC++e++ i++s+ RDY10356.1 288 FITNDSARKATHKKRKKGMLKKIEELSILCGIEACAIVYSP 328 89*************************************98 PP
3	SRF-TF	35.6	1.2e-11	496	533	3	40
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviif 40 i n+ r++++ +R++ +lK eELS+LCd+e++ i++ RDY10356.1 496 IANDCARKTSYMQRKKLLLKLVEELSTLCDIEACAIVY 533 889*********************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 650 aa Download sequence
MLQIPSIQTI CIKLVYIKRL LVAIETTTSI YFQFSFCFSV FLTTIMTRKK VKLVFIANDS 60 ARKATYKKRK QGMLKKIEEL SILCGIEACA IVYSPYDPEP EIWPSEWGVH RVLLKFRTMP 120 EFEQSKKMVS QESFIAQRIV KGNEQMKKLK MDNREKEMNM FMYQCLNAGR VLPDTNMTVA 180 DFNDLSSIID QNLKNISRRL ETLNVNEMTP NQLPQMQTPA LAVAKTEEMT LRNYGHGLDM 240 NANPMQRELF MNLINGNGDE TIMPPFGDAN LQLQIGFWPN LRKVKLAFIT NDSARKATHK 300 KRKKGMLKKI EELSILCGIE ACAIVYSPYD PEPDIWPSEW VVHRVLEKFR TMPEFEQSKK 360 MENQESFIAQ RIQKGNEQMK KLMMDNREKE MSMFVFQCLD ARRVLPRNNM IMADFNDLSS 420 LIEQNLNDIS KRLETLNVNE VTPNQLPQMQ SLAITVAKTE QMTLLNDGHQ LDMNANPIQR 480 QLIIFMARRR MKNALIANDC ARKTSYMQRK KLLLKLVEEL STLCDIEACA IVYIPYHREP 540 KIWPSESGAQ NVVIKLRSLP EWEQSKKMVN QEDFIAQSIL KGNEKIRTIV KENKETEMSL 600 FMYECLNKGR VEPHDNMTTA DFSDLLSIIE QKLKDISTRF QTLNLNEITL

Sequence ? help Back to Top

Protein Sequence Length: 650 aa Download sequence

MLQIPSIQTI CIKLVYIKRL LVAIETTTSI YFQFSFCFSV FLTTIMTRKK VKLVFIANDS  60
ARKATYKKRK QGMLKKIEEL SILCGIEACA IVYSPYDPEP EIWPSEWGVH RVLLKFRTMP  120
EFEQSKKMVS QESFIAQRIV KGNEQMKKLK MDNREKEMNM FMYQCLNAGR VLPDTNMTVA  180
DFNDLSSIID QNLKNISRRL ETLNVNEMTP NQLPQMQTPA LAVAKTEEMT LRNYGHGLDM  240
NANPMQRELF MNLINGNGDE TIMPPFGDAN LQLQIGFWPN LRKVKLAFIT NDSARKATHK  300
KRKKGMLKKI EELSILCGIE ACAIVYSPYD PEPDIWPSEW VVHRVLEKFR TMPEFEQSKK  360
MENQESFIAQ RIQKGNEQMK KLMMDNREKE MSMFVFQCLD ARRVLPRNNM IMADFNDLSS  420
LIEQNLNDIS KRLETLNVNE VTPNQLPQMQ SLAITVAKTE QMTLLNDGHQ LDMNANPIQR  480
QLIIFMARRR MKNALIANDC ARKTSYMQRK KLLLKLVEEL STLCDIEACA IVYIPYHREP  540
KIWPSESGAQ NVVIKLRSLP EWEQSKKMVN QEDFIAQSIL KGNEKIRTIV KENKETEMSL  600
FMYECLNKGR VEPHDNMTTA DFSDLLSIIE QKLKDISTRF QTLNLNEITL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	48	70	RKKVKLVFIANDSARKATYKKRK
2	300	304	KKRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G48670.1	1e-49	M-type_MADS family protein