PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RDY14286.1

Organism

Mucuna pruriens

Taxonomic ID

157652

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Mucuna

Family

C3H

Protein Properties

Length: 448aa MW: 47265 Da PI: 8.1473

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RDY14286.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	36	1.2e-11	49	74	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C +++rtG+C +G+rC+F+H++ RDY14286.1 49 DEADCTYYLRTGFCGFGSRCRFNHPR 74 6799********************96 PP
2	zf-CCCH	27.2	6.6e-09	105	125	7	27
SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 7 rffartGtCkyGdrCkFaHgp 27 ++++rt tCk+G +Ck++H++ RDY14286.1 105 QYYMRTRTCKFGLSCKYHHPR 125 59*****************96 PP
3	zf-CCCH	36.3	9.8e-12	146	170	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++++C+++ +tG+Ck+G++CkF+H+ RDY14286.1 146 GEKECSYYVKTGQCKFGSTCKFHHP 170 7899********************9 PP
4	zf-CCCH	31.7	2.7e-10	361	384	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 + C ++a+ G Ck+G+ CkF H++ RDY14286.1 361 PACTHYAQHGVCKFGSACKFDHPM 384 78********************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 448 aa Download sequence
MEQYGPSSEG SRSDPSPEWA GPGGETGLEE PMWQLGLGAA EETYPQRPDE ADCTYYLRTG 60 FCGFGSRCRF NHPRDRGAVV GVERIAGDYP ERVGQPVCQL KLQMQYYMRT RTCKFGLSCK 120 YHHPRQAGGT ATPVALNYYG YPLRPGEKEC SYYVKTGQCK FGSTCKFHHP VPAGIQIPAA 180 PSPVAPVSPL SVPVPSPLYS TMQPPPGPSS QQIGVLVARP PLLHGSLVQS PYGPVVVSPA 240 MVPFSGWGPY QASATGPVLH SGTPSNVGSA QLYGITQLSS SAAAYPGPYQ PSGSSVGPSS 300 SSQKEQAFPE RSSQPEYQYY PKTGEVKFGP SYRYHPPPDM SAPKANVILS PAGLPLRQGA 360 PACTHYAQHG VCKFGSACKF DHPMGSLDMP VAPYHVGSTI GTLAPSSSSS GSIGLTLLTG 420 GPVSQSNTQP SAQSSDPLAT AATTTSSN

Sequence ? help Back to Top

Protein Sequence Length: 448 aa Download sequence

MEQYGPSSEG SRSDPSPEWA GPGGETGLEE PMWQLGLGAA EETYPQRPDE ADCTYYLRTG  60
FCGFGSRCRF NHPRDRGAVV GVERIAGDYP ERVGQPVCQL KLQMQYYMRT RTCKFGLSCK  120
YHHPRQAGGT ATPVALNYYG YPLRPGEKEC SYYVKTGQCK FGSTCKFHHP VPAGIQIPAA  180
PSPVAPVSPL SVPVPSPLYS TMQPPPGPSS QQIGVLVARP PLLHGSLVQS PYGPVVVSPA  240
MVPFSGWGPY QASATGPVLH SGTPSNVGSA QLYGITQLSS SAAAYPGPYQ PSGSSVGPSS  300
SSQKEQAFPE RSSQPEYQYY PKTGEVKFGP SYRYHPPPDM SAPKANVILS PAGLPLRQGA  360
PACTHYAQHG VCKFGSACKF DHPMGSLDMP VAPYHVGSTI GTLAPSSSSS GSIGLTLLTG  420
GPVSQSNTQP SAQSSDPLAT AATTTSSN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G06410.1	1e-133	C3H family protein