PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR72054.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

MYB

Protein Properties

Length: 277aa MW: 30838.9 Da PI: 5.3491

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR72054.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	39.9	9.6e-13	16	63	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT eEd+ll ++ +W+ ++ g+ R++k+c++rw +yl RWR72054.1 16 KGPWTHEEDQLLRTFLLNNPNTSWRQVPPQAGLLRCGKSCRLRWMNYL 63 79****************************99**********97 PP
2	Myb_DNA-binding	44.4	3.9e-14	69	112	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg++T eE+ l++++++ G++ W+ Ia+ ++ gRt++++k+ w++ RWR72054.1 69 RGNFTLEEENLIIQLHAAVGNK-WSVIASQLP-GRTDNEIKNLWNT 112 89******************.*****.********997 PP

Sequence ? help Back to Top
Protein Sequence Length: 277 aa Download sequence
MGRAPCCSGE HAGLKKGPWT HEEDQLLRTF LLNNPNTSWR QVPPQAGLLR CGKSCRLRWM 60 NYLRPDIRRG NFTLEEENLI IQLHAAVGNK WSVIASQLPG RTDNEIKNLW NTKLRKLLVL 120 KGINPITHQP LCNPMLSDYV KQWVKSIEDA IITGLMAQSS SNNINSNSLH PTLPSFMSLP 180 LDSSLNEEGL GQSHPLKASP NQNALTDNSW VDDGSSRLND NLDGDLMMGE EACLQDNMDE 240 YLRDGFGTVP STPFFDGYMD SMMSAANLEE GLLATKA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G07690.1	5e-60	MYB family protein