PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR72148.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

HSF

Protein Properties

Length: 199aa MW: 22933.9 Da PI: 8.3793

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR72148.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	106.7	1.8e-33	30	120	2	101
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 Fl+k+y+++e + ++++sw+++g+ f+v+ + ef++ +Lp+yFkh nf+SF+RQLn+YgFkk+ +++ weF+h++F+kg+++ll +i RWR72148.1 30 FLTKTYDLIEGSGANHIVSWNDEGSGFIVWSPVEFSQFLLPRYFKHCNFSSFIRQLNTYGFKKSASNR---------WEFQHEKFRKGERHLLGEIT 117 9************************************************************99988.........****************** PP XXX CS HSF_DNA-bind 99 rkk 101 r+k RWR72148.1 118 RRK 120 *97 PP

Sequence ? help Back to Top
Protein Sequence Length: 199 aa Download sequence
MKMEKGGADP DRCSQSSSSH SPRSRCLAPF LTKTYDLIEG SGANHIVSWN DEGSGFIVWS 60 PVEFSQFLLP RYFKHCNFSS FIRQLNTYGF KKSASNRWEF QHEKFRKGER HLLGEITRRK 120 CLPSVYPSFL KACERRPEAE AIDIDSLVEE NKNLQKENSE LQLQIAHFKA LEVELLDWLS 180 HYMGGTSSNH QGQRVCRSL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G62020.1	2e-41	HSF family protein