PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR72192.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

bHLH

Protein Properties

Length: 678aa MW: 76057.7 Da PI: 4.9509

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR72192.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	35.9	1.4e-11	479	526	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ++h + ErrRR+++N++f L +l+P+ +K++ a++L ++eY+k+L+ RWR72192.1 479 TKHVISERRRREKLNEKFLILSSLVPSI-----TKVDQASVLGDTIEYLKELE 526 57999********************7.....6**************996 PP

Sequence ? help Back to Top
Protein Sequence Length: 678 aa Download sequence
MCWNMATVLQ NQEVVSNDLL RKKLAAAVRS IQWSYAIFWS LSTRHSGVLE WGAGYYNGDI 60 KTRKTLQLQP LELSVDQMGL ERSEQLKRLY ESLSAGDSNQ QSKRPSASLS PEDLTDTEWY 120 YLVCMSFTFN PGQGLPGRAL ANGHHIWLCN AHFADSKVFT RSLLAKSASI QTVVCFPLMG 180 GVLELGVTEL ISEDLPLLQH VKTSFLEFSM PVCSEQSTSS TQEADKDEDH TCTELDHEIV 240 NSMPLEKLNS VADCEMQTED APDAFAFSLH SYIPKDEIEL DQDRIEELNA NIFDELKMGS 300 SDGSSNGCVP NQNTDDSFML EGPNGASQVQ SWQFMDDEHS CDCISQSLAN PVKVVHLPKG 360 EKVTNQSVQD QQESNHNKLS LLGLETEDPH YTKTLSAIFS NSHRLIAKTY FHNGSCESSF 420 IVWRKDLDTE KLQASASQKM LKKILFEVVW MHDGFSPKTQ EEVGSKGIVW KFEGDDIGTK 480 HVISERRRRE KLNEKFLILS SLVPSITKVD QASVLGDTIE YLKELEQRVD ELEACKELGE 540 SEVRQRRKHP DITERTSDNY GHNENANGKR PSINKRKASN IDAADAELNW VLSKDNLADM 600 TVTVIEKEVL IEMLCPWREC LLLEIVDAIS NLHLDAHSVQ SSTTDGILTL KLRSKFRGAA 660 VASVGMIKQA LQRVVAKC

Sequence ? help Back to Top

Protein Sequence Length: 678 aa Download sequence

MCWNMATVLQ NQEVVSNDLL RKKLAAAVRS IQWSYAIFWS LSTRHSGVLE WGAGYYNGDI  60
KTRKTLQLQP LELSVDQMGL ERSEQLKRLY ESLSAGDSNQ QSKRPSASLS PEDLTDTEWY  120
YLVCMSFTFN PGQGLPGRAL ANGHHIWLCN AHFADSKVFT RSLLAKSASI QTVVCFPLMG  180
GVLELGVTEL ISEDLPLLQH VKTSFLEFSM PVCSEQSTSS TQEADKDEDH TCTELDHEIV  240
NSMPLEKLNS VADCEMQTED APDAFAFSLH SYIPKDEIEL DQDRIEELNA NIFDELKMGS  300
SDGSSNGCVP NQNTDDSFML EGPNGASQVQ SWQFMDDEHS CDCISQSLAN PVKVVHLPKG  360
EKVTNQSVQD QQESNHNKLS LLGLETEDPH YTKTLSAIFS NSHRLIAKTY FHNGSCESSF  420
IVWRKDLDTE KLQASASQKM LKKILFEVVW MHDGFSPKTQ EEVGSKGIVW KFEGDDIGTK  480
HVISERRRRE KLNEKFLILS SLVPSITKVD QASVLGDTIE YLKELEQRVD ELEACKELGE  540
SEVRQRRKHP DITERTSDNY GHNENANGKR PSINKRKASN IDAADAELNW VLSKDNLADM  600
TVTVIEKEVL IEMLCPWREC LLLEIVDAIS NLHLDAHSVQ SSTTDGILTL KLRSKFRGAA  660
VASVGMIKQA LQRVVAKC

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	485	490	ERRRRE
2	486	491	RRRREK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G41315.1	1e-168	bHLH family protein