PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR72201.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

RAV

Protein Properties

Length: 377aa MW: 43119.2 Da PI: 5.6606

Description

RAV family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR72201.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	28.2	4.6e-09	43	90	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 ++kGV +g W A+I+ + +r++lg+f ++ Aa a++ a+ kl+ RWR72201.1 43 RFKGVVLQQ-NGHWGAQIYA------NhQRIWLGTFKSERAAAMAYDSAAIKLHS 90 589998777.8****999......44******99**********996 PP
2	B3	82.4	4.2e-26	167	276	1	91
EEEE-..-HHHHTT-EE--HHH.HTT....................---..--SEEEEEETTS..-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh....................ggkkeesktltledesg..rsWevkliyrkksgryvltkGWkeFvkangLkeg 77 f+k+ltpsdv+k++rlv+pkk+a+++ +++ e+++l + d++ r W+++++y+k+s+++v+t+GW++Fvk+++L+++ RWR72201.1 167 FQKELTPSDVGKLNRLVIPKKHATKYfpllpdaciegegegeersdNENVGEDVELEFLDRNHnmRGWKFRYCYWKSSQSFVFTRGWSGFVKEKKLQAK 265 99*******************************999877766553344489999999976677****************************** PP -EEEEEE-SSSEE. CS B3 78 DfvvFkldgrsefe 91 D+v+F+ + e++ RWR72201.1 266 DVVIFY---KCEEK 276 ****...33333 PP

Sequence ? help Back to Top
Protein Sequence Length: 377 aa Download sequence
MEENTSNSTM VTTEGYDSNG SSSYNHRLVC KNSRYDNSPS SLRFKGVVLQ QNGHWGAQIY 60 ANHQRIWLGT FKSERAAAMA YDSAAIKLHS NDHHRNFPWT NITIQEPGFQ ELYTTDAVLN 120 MIKDGSYESK FADYIRTISS NAANNETLNS HPEGFFYQEG VFCKLLFQKE LTPSDVGKLN 180 RLVIPKKHAT KYFPLLPDAC IEGEGEGEER SDNENVGEDV ELEFLDRNHN MRGWKFRYCY 240 WKSSQSFVFT RGWSGFVKEK KLQAKDVVIF YKCEEKMIFC IDVRYNLWRE NGGSGGVGEE 300 LELKLGLGGW TAGGLDCESK KEPKQWIEMN RGKEPEQCIV MNTEKEPEQC IVMNTEKDNK 360 SVLLFGADIS DFNHTSL

Sequence ? help Back to Top

Protein Sequence Length: 377 aa Download sequence

MEENTSNSTM VTTEGYDSNG SSSYNHRLVC KNSRYDNSPS SLRFKGVVLQ QNGHWGAQIY  60
ANHQRIWLGT FKSERAAAMA YDSAAIKLHS NDHHRNFPWT NITIQEPGFQ ELYTTDAVLN  120
MIKDGSYESK FADYIRTISS NAANNETLNS HPEGFFYQEG VFCKLLFQKE LTPSDVGKLN  180
RLVIPKKHAT KYFPLLPDAC IEGEGEGEER SDNENVGEDV ELEFLDRNHN MRGWKFRYCY  240
WKSSQSFVFT RGWSGFVKEK KLQAKDVVIF YKCEEKMIFC IDVRYNLWRE NGGSGGVGEE  300
LELKLGLGGW TAGGLDCESK KEPKQWIEMN RGKEPEQCIV MNTEKEPEQC IVMNTEKDNK  360
SVLLFGADIS DFNHTSL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51120.1	3e-95	RAV family protein