PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR72320.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

C2H2

Protein Properties

Length: 531aa MW: 58756.7 Da PI: 6.6671

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR72320.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	20.9	9.3e-07	289	310	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 C++Cgk F+r nL+ H+r H RWR72320.1 289 FCSICGKGFKRDANLRMHMRGH 310 6*******************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 531 aa Download sequence
MDLGQSRFSE PSKKSSSATD SVKNFVGNQR FTQYDSQQHQ KWDTDTSLSY NTTLFQHNFP 60 EFQAPLEPPS SQAYNRKNEI KRPDQFDQAT TLVSNNLQGW DPRVMLNSLS FLEQKIHQLQ 120 NILQTMISQG GQLPGQANKH IAQQQLVTAD LTSIIIQLIS TAGTLLPSSK NSTSVTNPLI 180 GQLGSTLGSN ASLGTNVESH QNEIMAQGES SAMDYGDQMK GMSDCGGKHN YVDQDEAYIL 240 PVEGSEPLAV DENEMKDSED AAEGESLAPG SYEVLQLEKE EILAPHTHFC SICGKGFKRD 300 ANLRMHMRGH GDEYKTAAAL AKPTSKESCS EPVLIKRYSC PYAGCKRNKD HKKFQPLKTI 360 LCVKNHYKRS HCDKSYTCSR CNSKKFSVIA DLKTHEKHCG RDKWLCSCGT TFSRKDKLFG 420 HVALFQGHSP VLPADEIKGL SDQGQHKDPA MMLESKGFDL KPAGGVHALN MKVDDDHGFF 480 SQMNFDSCNF GGIQELPRPA FEIPESSFSF IQSGSCNFVQ STGENPSSNV L

Sequence ? help Back to Top

Protein Sequence Length: 531 aa Download sequence

MDLGQSRFSE PSKKSSSATD SVKNFVGNQR FTQYDSQQHQ KWDTDTSLSY NTTLFQHNFP  60
EFQAPLEPPS SQAYNRKNEI KRPDQFDQAT TLVSNNLQGW DPRVMLNSLS FLEQKIHQLQ  120
NILQTMISQG GQLPGQANKH IAQQQLVTAD LTSIIIQLIS TAGTLLPSSK NSTSVTNPLI  180
GQLGSTLGSN ASLGTNVESH QNEIMAQGES SAMDYGDQMK GMSDCGGKHN YVDQDEAYIL  240
PVEGSEPLAV DENEMKDSED AAEGESLAPG SYEVLQLEKE EILAPHTHFC SICGKGFKRD  300
ANLRMHMRGH GDEYKTAAAL AKPTSKESCS EPVLIKRYSC PYAGCKRNKD HKKFQPLKTI  360
LCVKNHYKRS HCDKSYTCSR CNSKKFSVIA DLKTHEKHCG RDKWLCSCGT TFSRKDKLFG  420
HVALFQGHSP VLPADEIKGL SDQGQHKDPA MMLESKGFDL KPAGGVHALN MKVDDDHGFF  480
SQMNFDSCNF GGIQELPRPA FEIPESSFSF IQSGSCNFVQ STGENPSSNV L

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G34370.2	1e-168	C2H2 family protein