PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR72345.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

C2H2

Protein Properties

Length: 451aa MW: 47355.6 Da PI: 8.9311

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR72345.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.4	1.2e-05	57	79	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H RWR72345.1 57 FVCEICNKGFQRDQNLQLHRRGH 79 89*******************88 PP
2	zf-C2H2	15.9	3.8e-05	133	155	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H++t+ RWR72345.1 133 FKCDKCSKKYAVQSDWKAHLKTC 155 89*******************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 451 aa Download sequence
MSVELENSAS GDASVSSSGP AAPAAATKKK RSLPGMPDPD AEVIALSPKT LMATNRFVCE 60 ICNKGFQRDQ NLQLHRRGHN LPWKLRQRSG KEVRKRVYVC PEPSCVHHDP SRALGDLTGI 120 KKHFCRKHGE KKFKCDKCSK KYAVQSDWKA HLKTCGTREY RCDCGTLFSR RDSFITHRAF 180 CDALAEESAK VQTTVANSTK EEEPKLKITV AAAAAASGVL PVREMENGTE IQHEIQMPQI 240 SMVGIGGSGA SDGSNRSLFA SLYTSPSAQS QGSTFSDLMG AMTRPDRSTT SAPPTSTEPP 300 SLCLSSNGPT LFSPPDRRQF APAQPAHMSA TALLQKAAQM GAAATSSSLF RGFGLGLSSS 360 TSPVPDNMQW DHSDPASVGM GLGHPGMGLS ELMMGQSIFG AKPATLDLLG LGMGIGGGAA 420 PGGLSALITS IGNGLDVSAS FGGGGNSPGK S

Sequence ? help Back to Top

Protein Sequence Length: 451 aa Download sequence

MSVELENSAS GDASVSSSGP AAPAAATKKK RSLPGMPDPD AEVIALSPKT LMATNRFVCE  60
ICNKGFQRDQ NLQLHRRGHN LPWKLRQRSG KEVRKRVYVC PEPSCVHHDP SRALGDLTGI  120
KKHFCRKHGE KKFKCDKCSK KYAVQSDWKA HLKTCGTREY RCDCGTLFSR RDSFITHRAF  180
CDALAEESAK VQTTVANSTK EEEPKLKITV AAAAAASGVL PVREMENGTE IQHEIQMPQI  240
SMVGIGGSGA SDGSNRSLFA SLYTSPSAQS QGSTFSDLMG AMTRPDRSTT SAPPTSTEPP  300
SLCLSSNGPT LFSPPDRRQF APAQPAHMSA TALLQKAAQM GAAATSSSLF RGFGLGLSSS  360
TSPVPDNMQW DHSDPASVGM GLGHPGMGLS ELMMGQSIFG AKPATLDLLG LGMGIGGGAA  420
PGGLSALITS IGNGLDVSAS FGGGGNSPGK S

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66730.1	1e-124	C2H2 family protein