PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR72454.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

MYB

Protein Properties

Length: 1121aa MW: 123575 Da PI: 4.8456

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR72454.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	60.3	4.3e-19	45	91	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+eEdell +av+q+ g++Wk+Ia+++ Rt+ qc +rwqk+l RWR72454.1 45 KGQWTAEEDELLCRAVQQYKGRNWKKIAECFK-DRTDVQCLHRWQKVL 91 799**************************9.**********986 PP
2	Myb_DNA-binding	56.6	6e-18	97	143	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd+ ++d+v ++G + W+tIa+ ++ gR +kqc++rw+++l RWR72454.1 97 KGPWSKEEDDMIIDLVGKYGAKKWSTIAQALP-GRIGKQCRERWHNHL 143 79****************************.***********97 PP
3	Myb_DNA-binding	49.5	9.9e-16	149	191	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 r +WT+eE++ l++a++ +G++ W+ + ++ gRt++ +k++w+ RWR72454.1 149 REAWTQEEELALIQAHQIYGNK-WAELTKFLP-GRTDNAIKNHWN 191 789*****************.*****.*********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 1121 aa Download sequence
MADKTKSARN SEVTAVVPSN GGSDCFQKPR PFHGRTSGPT RRSTKGQWTA EEDELLCRAV 60 QQYKGRNWKK IAECFKDRTD VQCLHRWQKV LNPELVKGPW SKEEDDMIID LVGKYGAKKW 120 STIAQALPGR IGKQCRERWH NHLNPSINRE AWTQEEELAL IQAHQIYGNK WAELTKFLPG 180 RTDNAIKNHW NSSVKKKVDS YLASGLLTQF QGLPNVENLN KYVSSSSANK PQESEDSGFK 240 DGVEVEELFN CSQGSTSVNC SNVTNAIPVH VQQEFEMREE DIREMMQVSD SSLGFKESCA 300 PIGETTCAVP EMPVQLSSHG FSNSSSFEKV RETSKWNSSG AGGNQEIGSI LVQDSIGLHA 360 PSSMENVLDH PIEPLDDILS FNGDGSKNKL LVTGIGKVQE SHCLVETSQW HSSDARGNHE 420 TESILVQDSI RFHSPRSMEN ILADPIEPLD DCNRNSFLET GIDKGFLLKS SAEGSNVVDL 480 DGCADSLIYQ CDVQGFEMAR AFASCSIVCQ SDNQGSEAVR MLASSSHPYC PCRPSDMSGM 540 SCSKSLFTSV SSSLPPGDSR DPFRSEDNEG QEISIETQNL EPVTCSYDEF VYTSVSKNPP 600 CTGDWANDGI YAESDQKKEV SELKTIEMFG FANRDAIGNH SRMEGSSNPH TEKWGSEYLS 660 YEPPRFPSLE IPFVNCDLIS SGDEAYSPLG IRRLMMSSMN CSTPYSLWDS SIDEENSDAA 720 LNGAAKSFIC TPSVLKKRNR DLLSPLQERK CDKKGLFCAS PLNRSDISCL DVIFDENGTC 780 KASLSSFEGA LISPSPYSRK RNSILVSPRD KENIDRKDEN GVEKIKQGLV GFEQLREAGV 840 DIGSQTKPTG VLVEHNMNDM LLFSPQDTFS TSGPLNTGAR TPRSLAGRSL ETTSDQIDLV 900 DGSVEPSSRD QGFFGVFTPN VGDKKHGHHL NPLALQVTVE KDGSFNSAGV ENINIFAETP 960 GTKRGIESPS SWKSPWFMNS LLSGQRFDTE ITFEDIGIFL SPGGRTYDAI GLMKQLNEHT 1020 AAALAEAKEV LATENPEMDV RHMNENCLAD QSSSKENNQL QDNEMGNPIL SQHNVLPFQT 1080 ERRVLDFNGC ATPIKENGKA NGGETSLNFS SPSSYLMKGC R

Sequence ? help Back to Top

Protein Sequence Length: 1121 aa Download sequence

MADKTKSARN SEVTAVVPSN GGSDCFQKPR PFHGRTSGPT RRSTKGQWTA EEDELLCRAV  60
QQYKGRNWKK IAECFKDRTD VQCLHRWQKV LNPELVKGPW SKEEDDMIID LVGKYGAKKW  120
STIAQALPGR IGKQCRERWH NHLNPSINRE AWTQEEELAL IQAHQIYGNK WAELTKFLPG  180
RTDNAIKNHW NSSVKKKVDS YLASGLLTQF QGLPNVENLN KYVSSSSANK PQESEDSGFK  240
DGVEVEELFN CSQGSTSVNC SNVTNAIPVH VQQEFEMREE DIREMMQVSD SSLGFKESCA  300
PIGETTCAVP EMPVQLSSHG FSNSSSFEKV RETSKWNSSG AGGNQEIGSI LVQDSIGLHA  360
PSSMENVLDH PIEPLDDILS FNGDGSKNKL LVTGIGKVQE SHCLVETSQW HSSDARGNHE  420
TESILVQDSI RFHSPRSMEN ILADPIEPLD DCNRNSFLET GIDKGFLLKS SAEGSNVVDL  480
DGCADSLIYQ CDVQGFEMAR AFASCSIVCQ SDNQGSEAVR MLASSSHPYC PCRPSDMSGM  540
SCSKSLFTSV SSSLPPGDSR DPFRSEDNEG QEISIETQNL EPVTCSYDEF VYTSVSKNPP  600
CTGDWANDGI YAESDQKKEV SELKTIEMFG FANRDAIGNH SRMEGSSNPH TEKWGSEYLS  660
YEPPRFPSLE IPFVNCDLIS SGDEAYSPLG IRRLMMSSMN CSTPYSLWDS SIDEENSDAA  720
LNGAAKSFIC TPSVLKKRNR DLLSPLQERK CDKKGLFCAS PLNRSDISCL DVIFDENGTC  780
KASLSSFEGA LISPSPYSRK RNSILVSPRD KENIDRKDEN GVEKIKQGLV GFEQLREAGV  840
DIGSQTKPTG VLVEHNMNDM LLFSPQDTFS TSGPLNTGAR TPRSLAGRSL ETTSDQIDLV  900
DGSVEPSSRD QGFFGVFTPN VGDKKHGHHL NPLALQVTVE KDGSFNSAGV ENINIFAETP  960
GTKRGIESPS SWKSPWFMNS LLSGQRFDTE ITFEDIGIFL SPGGRTYDAI GLMKQLNEHT  1020
AAALAEAKEV LATENPEMDV RHMNENCLAD QSSSKENNQL QDNEMGNPIL SQHNVLPFQT  1080
ERRVLDFNGC ATPIKENGKA NGGETSLNFS SPSSYLMKGC R

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G32730.1	1e-110	MYB family protein