PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR72586.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

C2H2

Protein Properties

Length: 533aa MW: 58439.2 Da PI: 8.5636

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR72586.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.1	1.5e-05	77	99	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H RWR72586.1 77 FVCEICNKGFQRDQNLQLHRRGH 99 89*******************88 PP
2	zf-C2H2	11.8	0.00077	153	175	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k++ +s+ k H + + RWR72586.1 153 WKCDKCSKRYAVQSDWKAHSKIC 175 58*****************9876 PP

Sequence ? help Back to Top
Protein Sequence Length: 533 aa Download sequence
MKGSTIQQHQ VVDENMSNLT SASGEASASS GNIYQQSFAS PNPTTTVKKK RNLPGNPDPD 60 AEVIALSPKT LMATNRFVCE ICNKGFQRDQ NLQLHRRGHN LPWKLKQRTS KEVKKRVYIC 120 PEPTCVHHDP SRALGDLTGI KKHFCRKHGE KKWKCDKCSK RYAVQSDWKA HSKICGTREY 180 RCDCGTLFSR RDSFITHRAF CDALAEESAR AISTNPLTNP LLSSQPGTST AHGHSSNINL 240 QAQFHLLNPT DNNSQSNNIN AHDLQGLSMK REQQQEQHHF NMRQEMPPWL SMVGAGPGPQ 300 SQTPTHLNQL DLPSSIFSTR LEHEFPHPQA PIPSENPSLP SPFQPTASPH MSATALLQKA 360 AQMGATMSKP SSMFRPHQGH MSANATASAA ATSGFVLAQS SREEMESSFV HGLTTFGNKA 420 VLVDHSSSTS SASPSLLQNM MSSLSSGGGF EGSFDETFGG LFGSKREGNP GENPTKGHHR 480 NEEGGSGEND GLTRDFLGLR AFSHRDILNM AALDPCMSSP SYEQTQNQKP WQG

Sequence ? help Back to Top

Protein Sequence Length: 533 aa Download sequence

MKGSTIQQHQ VVDENMSNLT SASGEASASS GNIYQQSFAS PNPTTTVKKK RNLPGNPDPD  60
AEVIALSPKT LMATNRFVCE ICNKGFQRDQ NLQLHRRGHN LPWKLKQRTS KEVKKRVYIC  120
PEPTCVHHDP SRALGDLTGI KKHFCRKHGE KKWKCDKCSK RYAVQSDWKA HSKICGTREY  180
RCDCGTLFSR RDSFITHRAF CDALAEESAR AISTNPLTNP LLSSQPGTST AHGHSSNINL  240
QAQFHLLNPT DNNSQSNNIN AHDLQGLSMK REQQQEQHHF NMRQEMPPWL SMVGAGPGPQ  300
SQTPTHLNQL DLPSSIFSTR LEHEFPHPQA PIPSENPSLP SPFQPTASPH MSATALLQKA  360
AQMGATMSKP SSMFRPHQGH MSANATASAA ATSGFVLAQS SREEMESSFV HGLTTFGNKA  420
VLVDHSSSTS SASPSLLQNM MSSLSSGGGF EGSFDETFGG LFGSKREGNP GENPTKGHHR  480
NEEGGSGEND GLTRDFLGLR AFSHRDILNM AALDPCMSSP SYEQTQNQKP WQG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13810.1	1e-120	C2H2 family protein