PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR72598.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

bHLH

Protein Properties

Length: 485aa MW: 55732.9 Da PI: 6.5645

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR72598.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	26	1.7e-08	306	353	2	54
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r h Er RR++ ++ f+ Lr+llP++ K + ++L k+ +Y++ L RWR72598.1 306 RLHHILSERMRRRKSKEYFQALRSLLPPD-----SKKDQLSVLLKTLDYLNAL 353 778999********************8.....5889999******9987 PP

Sequence ? help Back to Top
Protein Sequence Length: 485 aa Download sequence
MQSTAIALFC NPMDSIFFLE DEARTHFLQA MGQAIGCAYI CLWSYLPPPQ NYLISMDAWY 60 NVEMDQPSSS TGSLSHRLFD GYRRSVFNVE YGRVPGHAFK EGMAFLEQHY NLELMRWVSN 120 ETQRWFYEEA RIKTVIFMGC GSGEVEIGTM NSTNINMQLE IMKLLTKDLF QEYQLKEPYI 180 MDQIEHENII TRTSPIQSHS RAMRLGDIQS LTMTTSGIVE ITNTILAGLS FPSSSCQREE 240 CNTLQCQIGD GTGAFVSYAS SIVPRMETRL TSHGQFKMKL VFAMLRSIYS TMREAKFQQN 300 HPTSSRLHHI LSERMRRRKS KEYFQALRSL LPPDSKKDQL SVLLKTLDYL NALKAQILEL 360 QGRNQRIAVH LSPAKEARGE AGDMNEMVEM HGLSGNESTP AYQQIELRVT VSKNDCDMVD 420 LVFHLLECLK QMEEKMSIVS MQADTELHHM NQFNQAIFRL KIKTSEWDER LIKEALIKAV 480 DDLTR

Sequence ? help Back to Top

Protein Sequence Length: 485 aa Download sequence

MQSTAIALFC NPMDSIFFLE DEARTHFLQA MGQAIGCAYI CLWSYLPPPQ NYLISMDAWY  60
NVEMDQPSSS TGSLSHRLFD GYRRSVFNVE YGRVPGHAFK EGMAFLEQHY NLELMRWVSN  120
ETQRWFYEEA RIKTVIFMGC GSGEVEIGTM NSTNINMQLE IMKLLTKDLF QEYQLKEPYI  180
MDQIEHENII TRTSPIQSHS RAMRLGDIQS LTMTTSGIVE ITNTILAGLS FPSSSCQREE  240
CNTLQCQIGD GTGAFVSYAS SIVPRMETRL TSHGQFKMKL VFAMLRSIYS TMREAKFQQN  300
HPTSSRLHHI LSERMRRRKS KEYFQALRSL LPPDSKKDQL SVLLKTLDYL NALKAQILEL  360
QGRNQRIAVH LSPAKEARGE AGDMNEMVEM HGLSGNESTP AYQQIELRVT VSKNDCDMVD  420
LVFHLLECLK QMEEKMSIVS MQADTELHHM NQFNQAIFRL KIKTSEWDER LIKEALIKAV  480
DDLTR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	315	320	MRRRKS
2	316	321	RRRKSK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56960.1	1e-21	bHLH family protein