PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RWR72798.1
Organism
Cinnamomum micranthum f. kanehirae
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum
Family LBD
Protein Properties Length: 206aa    MW: 22338.7 Da    PI: 7.1261
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RWR72798.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260103.22.2e-322103197
      DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                 +C++C+vlr++C+++C+l+p++     p++q +++ +v+k+FG++ ++++++a+pe++r+++++sl+yeA+ r+ +Pv+Gavg++++++++++q+++e+
  RWR72798.1   2 SCNGCRVLRKGCSESCILRPCLqwiesPEAQGHATVFVAKFFGRAGLMSFISAVPENQRPALFRSLLYEACGRTVNPVNGAVGLLWTGNWHVCQKAVEA 100
                 6***********************************************************************************************999 PP

      DUF260  95 all 97 
                 +l+
  RWR72798.1 101 VLR 103
                 876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    
MSCNGCRVLR KGCSESCILR PCLQWIESPE AQGHATVFVA KFFGRAGLMS FISAVPENQR  60
PALFRSLLYE ACGRTVNPVN GAVGLLWTGN WHVCQKAVEA VLRGVAIRPA GEIPAMESDE  120
ASEAWGLYTR PWVPKRTGSV MVDDVARSMT LDLDLCLGSA VVGEKRRPET PSIYSDEGSV  180
TTCVESSGRR AAVGGGEERK LLDLFM
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49940.15e-72LBD family protein