PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RWR72807.1
Organism
Cinnamomum micranthum f. kanehirae
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum
Family GRAS
Protein Properties Length: 586aa    MW: 65391.6 Da    PI: 6.0984
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RWR72807.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS453.31.6e-1382165861374
        GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 
                 l+++L++cA+a++++dl +a++l+ +l++++s +g+p+qRl ay++e+L arla+s+s++ykal+++e +   s++ l+++++++e++P++kf+++ aN
  RWR72807.1 216 LKQVLIACAKAIAENDLVAAEWLMDELRQMVSVSGEPIQRLGAYLLEGLVARLASSGSSIYKALRCKEPT---SADLLSYMHILYEACPYFKFGYMSAN 311
                 5799*****************************************************************9...9************************* PP

        GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrv 196
                  aI eav+ e+++Hi+Df+i qG QW++L+qaL +Rp+gpp++RiTg++++ s   +   l+ +g+rL+++Ae+++vpfefn l   +  ++e+ +Lrv
  RWR72807.1 312 GAIAEAVKDENHIHIVDFQIAQGSQWITLIQALGARPGGPPHIRITGIDDSVSAyaRGGGLQIVGQRLSRLAESCNVPFEFNGL-DMSGCEVEVGHLRV 409
                 **************************************************888899999************************6.6688999******* PP

        GRAS 197 kpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreiv 295
                 +p+EalaVn+++qlh+++desvs++++rd++L++vkslsPkvv++veqe+++n+++F+ rf+e+l+yy+++f+s++++l+r+++eri+vE+++l+r+iv
  RWR72807.1 410 RPREALAVNFAFQLHHMPDESVSTRNHRDRLLRMVKSLSPKVVTLVEQESNTNTAPFFPRFMETLDYYTSIFESIDVTLSRDNKERISVEQHCLARDIV 508
                 *************************************************************************************************** PP

        GRAS 296 nvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                 n++aceg er+erhe l+kWr+r+++aGF+p+pls+ +++++k+ll+++ ++ yr+ee++g l+lgW++r+Lv+ +aWr
  RWR72807.1 509 NIIACEGPERVERHEVLGKWRSRFMMAGFSPYPLSSWVNATIKTLLENYCEN-YRLEERDGVLYLGWRNRALVVSCAWR 586
                 *************************************************955.*************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 586 aa     Download sequence    
MSSQIGFESS AARKDYRYFP DHTFHSFQTG IPVPRVTQLA GHSPMQASKK MVTSNGSHQL  60
YNQHEVDSYC LPHKSHALDH LSSDDGCQVS NFTIQAAHEF CTLESSLTTP SYAIYNTPSS  120
VSFSPNHGSP ASQQDSQSYP SDTRHSPDNA YGSPISGSCI TDDIDDLRHK LRELETVMLG  180
PDSDVVDDTV EGAAFSSHAA VAERWRQVME IPRGDLKQVL IACAKAIAEN DLVAAEWLMD  240
ELRQMVSVSG EPIQRLGAYL LEGLVARLAS SGSSIYKALR CKEPTSADLL SYMHILYEAC  300
PYFKFGYMSA NGAIAEAVKD ENHIHIVDFQ IAQGSQWITL IQALGARPGG PPHIRITGID  360
DSVSAYARGG GLQIVGQRLS RLAESCNVPF EFNGLDMSGC EVEVGHLRVR PREALAVNFA  420
FQLHHMPDES VSTRNHRDRL LRMVKSLSPK VVTLVEQESN TNTAPFFPRF METLDYYTSI  480
FESIDVTLSR DNKERISVEQ HCLARDIVNI IACEGPERVE RHEVLGKWRS RFMMAGFSPY  540
PLSSWVNATI KTLLENYCEN YRLEERDGVL YLGWRNRALV VSCAWR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.10.0GRAS family protein