PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RWR72851.1
Organism
Cinnamomum micranthum f. kanehirae
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum
Family M-type_MADS
Protein Properties Length: 244aa    MW: 27538.4 Da    PI: 11.3146
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RWR72851.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF98.23.3e-31170220151
                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
      SRF-TF   1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 
                 krienk+nrqvtfskRr g+lKKA+E+SvLCdaeva+iifs++gklyey++
  RWR72851.1 170 KRIENKINRQVTFSKRRMGLLKKAHEISVLCDAEVALIIFSTKGKLYEYAT 220
                 79***********************************************86 PP
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    
MPHSHDIQVI KQMKRKHSAP QWAPPVSPTD LVCPSVHRGS HTPPAPTCTT AHSLPKASPA  60
NDSTVASTNH KSTTFFPKTT PVFPNHLSPP KPLSPLPYIY PTNSKHRARL LLHHLLRLLL  120
LCLVLSPPQN LLHIGRPHTR IPTRLSEFLL LLLLLLLPFR KMGRGRVQLK RIENKINRQV  180
TFSKRRMGLL KKAHEISVLC DAEVALIIFS TKGKLYEYAT DSRYFLIFFS PNTPISHHSA  240
SVSR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60910.12e-35MIKC_MADS family protein