PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR72852.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

MIKC_MADS

Protein Properties

Length: 250aa MW: 29225.2 Da PI: 7.8721

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR72852.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	98.6	2.5e-31	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtf+kRrng+lKKA+ELSvLCdae+a+iifs++gklye++s RWR72852.1 9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEIALIIFSNRGKLYEFCS 59 79***********************************************96 PP
2	K-box	90.6	2.9e-30	84	170	13	99
K-box 13 kaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 +++ e+ Lk+++e Lqr+qR+llGedLe+L+ +eL+qLe+qLeksl +iRs+K++++l+++++l++ke+ l e+n+a+++k++ RWR72852.1 84 ESQGTFDEYLSLKARVEFLQRSQRNLLGEDLEPLNTNELEQLEDQLEKSLHQIRSTKTQFMLDELSDLRRKERTLIEANRAIKRKWD 170 56667789***************************************************************************9985 PP

Sequence ? help Back to Top
Protein Sequence Length: 250 aa Download sequence
MGRGRVVLKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEIALIIFSN RGKLYEFCSS 60 SNMLKTLDRY QRCSQLEYGI LARESQGTFD EYLSLKARVE FLQRSQRNLL GEDLEPLNTN 120 ELEQLEDQLE KSLHQIRSTK TQFMLDELSD LRRKERTLIE ANRAIKRKWD YEFHSCQLEE 180 FETGNVLQLS WENSGQNIPC SRQPTHTETF FQPLERDPAP QIRYHPVSAE QTSIANPAQN 240 ATTFMPGWMV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02310.1	2e-95	MIKC_MADS family protein